PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_77437.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 361aa    MW: 40524.8 Da    PI: 10.115
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_77437.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-0788130243
                      SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksr 43 
                      + WT+e d +l +a     +    Wk+++++++ gR++++c +r
     MLOC_77437.1  88 DEWTEEQDTILRQAYFTARPSphFWKKVSKMVP-GRSAEDCFNR 130
                      57************98888668***********.*******988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.002486137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-586132IPR009057Homeodomain-like
SuperFamilySSF466895.07E-987133IPR009057Homeodomain-like
CDDcd001676.68E-789130No hitNo description
PfamPF002491.2E-689130IPR001005SANT/Myb domain
PROSITE profilePS500906.6990135IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MQEPKPPSRG EDLTGKRKRG TGRKQASKKQ THQEHKSDCQ EIVPITEPQN IIHKKSENNP  60
SSIVQPKIGD EELSGIKEGV QQQCCPSDEW TEEQDTILRQ AYFTARPSPH FWKKVSKMVP  120
GRSAEDCFNR VHADLSTPTP IAPRHRSKTQ FSPLAHFTLS DPKFPNLVEP LTGRPRTAKQ  180
KSLLAQKTVR HLLKKHSLID QAHEADHFSI FETSPSALQL NIPLEDSPGT PENYLKSFSM  240
HKYSVSSSAH KRPLSRLKTK QTEESPAVLK PIKNTVLHEK YITQLSRREG AKKPRKKAAG  300
TNATDPKRPL SEQQAGSVKA AKNALISEAT DFIGQFKKLQ ANSLAHILEN SEDDEDFSVS  360
Y
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_77437.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3665960.0AK366596.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2044J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198283.10.0uncharacterized protein LOC109784096
TrEMBLA0A287X4470.0A0A287X447_HORVV; Uncharacterized protein
TrEMBLF2DRS80.0F2DRS8_HORVV; Predicted protein
STRINGMLOC_77437.10.0(Hordeum vulgare)