PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_77258.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | WRKY | ||||||||
Protein Properties | Length: 341aa MW: 37366.2 Da PI: 10.3676 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.2 | 1.2e-31 | 275 | 332 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYegeHnh+ MLOC_77258.2 275 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGEHNHT 332 9*************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.4E-18 | 225 | 271 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.7E-34 | 261 | 332 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.297 | 268 | 334 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-27 | 271 | 332 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-38 | 273 | 333 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-27 | 275 | 331 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MEEVEEANRM AVESCHRVLG LLTQTQGPEQ LRSIALGTDE ACAKFRKVVS LLGNEPSGGT 60 THPRAKVVSR RQTPGFLSQK GFLDNNTPVV VLNSAHPSTS SAQVYPRNSI LDSQPAHPIG 120 GPPKLVQPLS AHFQFGDSSR YNQFQHQHQQ QQQKMRAEMF KRSNSGINLK FDSPSGTGTM 180 SSARSFMSSL SMDGSVASLD AKSSSFHLIG GPAMSDPVNA QQAPRRRCSG RGEDGNGKCA 240 ATGRCHCSKR SRKLRVKRTI KVPAISNKIA DIPPDEYSWR KYGQKPIKGS PHPRGYYKCS 300 SVRGCPARKH VERCVDDPSM LIVTYEGEHN HTRMPTQSAQ A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-20 | 266 | 335 | 7 | 75 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_77258.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248640 | 0.0 | AK248640.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf169m16, mRNA sequence. | |||
GenBank | AK354776 | 0.0 | AK354776.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1011A24. | |||
GenBank | AK375802 | 0.0 | AK375802.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3105H03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149328.1 | 0.0 | protein WRKY1-like isoform X1 | ||||
Swissprot | Q93WU6 | 4e-91 | WRK74_ARATH; Probable WRKY transcription factor 74 | ||||
TrEMBL | M0Z521 | 0.0 | M0Z521_HORVV; Uncharacterized protein | ||||
STRING | MLOC_77258.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2859 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04670.1 | 8e-82 | WRKY DNA-binding protein 39 |
Publications ? help Back to Top | |||
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