PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_7649.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 127aa MW: 14465.4 Da PI: 9.883 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.1 | 3.1e-13 | 26 | 98 | 14 | 86 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldg 86 + l +p +f e+hg+ k++ +++l+ +g W v+l+++k+ g+ +++ GW +F +n+Lk+gD++ F+ + MLOC_7649.3 26 QYLNVPLEFHEAHGYAKRS--KVVLR-MRGMDWAVNLKHNKRAGGktrSTFRYGWHQFLVDNRLKVGDICFFRALR 98 56889********999876..45555.599*******9966655556699**********************9543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.1E-24 | 5 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.068 | 13 | 122 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.9E-14 | 21 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-10 | 26 | 98 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.46E-10 | 28 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MDVDDAPTSQ FAVTLSVCHF LGKQQQYLNV PLEFHEAHGY AKRSKVVLRM RGMDWAVNLK 60 HNKRAGGKTR STFRYGWHQF LVDNRLKVGD ICFFRALRGN NAGRGGDDGD DHELKVQVRK 120 LDGSFVD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_7649.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374007 | 0.0 | AK374007.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3050O05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148431.1 | 1e-64 | B3 domain-containing protein Os03g0212300-like | ||||
Swissprot | Q10Q26 | 7e-44 | Y3123_ORYSJ; B3 domain-containing protein Os03g0212300 | ||||
TrEMBL | F2ECY2 | 1e-88 | F2ECY2_HORVV; Predicted protein | ||||
STRING | MLOC_7649.2 | 1e-89 | (Hordeum vulgare) |
Publications ? help Back to Top | |||
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