PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_7637.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 539aa    MW: 58941.7 Da    PI: 6.9822
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_7637.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.31.5e-107835261374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  l++lL++cA  v++g l +a+ +L+++ +las d+  ++qRlaa+f+ ALa++l++ v++l++al + ++++ +   + aa++  +++ P+lk+++lt
  MLOC_7637.1  83 LISLLYQCASEVAAGALDRANLCLEHIMQLASLDApHTLQRLAAVFADALARKLLNLVPGLSRALLSASSAD-DAHLVPAARRHMFDMLPFLKLAYLT 179
                  5799*******************************99***************************98877774.5555667889999************ PP

         GRAS  98 aNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                  +N+aIlea+ege+ vH++D++  + +++QW+aL++a+  R++g+p+lRiT+v++    ske l  +   L + Ae++++pf+fn+ v+ rled+++++
  MLOC_7637.1 180 TNHAILEAMEGERFVHVVDLSgpAANPAQWIALFHAFRGRRDGTPNLRITAVHE----SKEFLAGMSAVLVREAEAFDIPFQFNA-VEARLEDMDFDA 272
                  ********************866899****************************....9**************************.7999**999987 PP

         GRAS 194 L....rvkpgEalaVnlvlqlhrll...................................................................desvsl 220
                  L    rv++gEalaV+++lqlhrll                                                                   +++   
  MLOC_7637.1 273 LrhnlRVRSGEALAVSVALQLHRLLaaddtggkrqggltplqiiarsspssfgellerelntrlqlspdasafssmspqspigghfpagaggQQRP-- 368
                  755447888******************************************************************************964433333.. PP

         GRAS 221 eserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres....eerikvErellgreivnvvacegaerrerhetlek 314
                    ++ ++L++vk lsPk++vv+eqea+hn++ F erf eal+yy++lfd+le  ++++      er+ vEr +lg ei+++vaceg er+erhe++++
  MLOC_7637.1 369 --KIGSFLSAVKALSPKIMVVTEQEANHNGAAFHERFDEALNYYASLFDCLERAAAAQRgsaaAERARVERSVLGDEIRSIVACEGGERKERHERARQ 464
                  ..4667*********************************************7776555445889********************************** PP

         GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                  W  r+e+aG++ v ls++ a++a+ ll+ +++ gy+v ++   ++++l+W+++pL++v+aWr
  MLOC_7637.1 465 WAGRMEAAGMEHVGLSYSGAMEARKLLQSCGWGGYEVRHDaeGHCFFLCWHKKPLYAVTAWR 526
                  *************************************9553378999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.09657504IPR005202Transcription factor GRAS
PfamPF035145.1E-10583526IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MPWLDSLDNL NYSLQGVEPR TWGGIASIMF QQQQPPQQHQ QQQEDVMSSA TSSPASTLYS  60
PTPYASAGTW VKELSSDQCS VRLISLLYQC ASEVAAGALD RANLCLEHIM QLASLDAPHT  120
LQRLAAVFAD ALARKLLNLV PGLSRALLSA SSADDAHLVP AARRHMFDML PFLKLAYLTT  180
NHAILEAMEG ERFVHVVDLS GPAANPAQWI ALFHAFRGRR DGTPNLRITA VHESKEFLAG  240
MSAVLVREAE AFDIPFQFNA VEARLEDMDF DALRHNLRVR SGEALAVSVA LQLHRLLAAD  300
DTGGKRQGGL TPLQIIARSS PSSFGELLER ELNTRLQLSP DASAFSSMSP QSPIGGHFPA  360
GAGGQQRPKI GSFLSAVKAL SPKIMVVTEQ EANHNGAAFH ERFDEALNYY ASLFDCLERA  420
AAAQRGSAAA ERARVERSVL GDEIRSIVAC EGGERKERHE RARQWAGRME AAGMEHVGLS  480
YSGAMEARKL LQSCGWGGYE VRHDAEGHCF FLCWHKKPLY AVTAWRPAGY HHSGGARSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-2611352632375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_7637.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152680.10.0scarecrow-like protein 3
TrEMBLA0A287QZI30.0A0A287QZI3_HORVV; Uncharacterized protein
STRINGMLOC_7637.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-113scarecrow-like 3