PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_74503.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

GRAS

Protein Properties

Length: 315aa MW: 35028.5 Da PI: 7.2529

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_74503.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	231.8	3e-71	1	313	87	374
GRAS 87 vsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 ++P+l+++ taN aI +a+ + +H++D++ ++QW+ Ll+ +a+Rp + lR+T v++ ++e l+ t+ La+ A+ l++ ++f MLOC_74503.1 1 MCPFLRLAGTTANYAIIDAARTVrnAVLHVVDLGGADPAQWLLLLRLFAKRPgagAHDQILRLTIVNE----DNEFLSGTAALLAREAKILHIALQF 93 8*****************98764666********************74333558****....9******************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrll...................desvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 +++ + + l++++L v+ gEal + + lqlhrll + +++ + d++L+ + +lsPk++vv+eqeadhn ++F +r MLOC_74503.1 94 HPVKLHIDQLLSIDRLGVRGGEALFIVSTLQLHRLLadgfaevaarpddrkgkrqVQAHATMTRADALLRDLAGLSPKLMVVTEQEADHN-GDFKAR 189 755566677***************************************98844444444699*******************6.68 PP GRAS 257 flealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgy 349 f +al+yy alfd+le+++p+ er+ vEr ll +ei+++vac ga+rrerhe + kW +r+++aGF+pv+++ ++++q +l ++ + s+ y MLOC_74503.1 190 FENALNYYGALFDALEESVPARGsaLERADVERCLLLQEIRDIVACDGAQRRERHEWMVKWADRMQAAGFEPVAMRADTVAQTVMLGQMLAgcSRAY 286 ***********99999876579***********************************************************99888888 PP GRAS 350 rve..eesgslvlgWkdrpLvsvSaWr 374 rv e++ +++++W+d p++svS Wr MLOC_74503.1 287 RVIssEKDVCFFICWRDIPMFSVSTWR 313 98557789999*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.1E-68	1	313	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	35.36	1	289	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MCPFLRLAGT TANYAIIDAA RTVRNAVLHV VDLGGADPAQ WLLLLRLFAK RPGAGAHDQI 60 LRLTIVNEDN EFLSGTAALL AREAKILHIA LQFHPVKLHI DQLLSIDRLG VRGGEALFIV 120 STLQLHRLLA DGFAEVAARP DDRKGKRQVQ AHATMTRADA LLRDLAGLSP KLMVVTEQEA 180 DHNGDFKARF ENALNYYGAL FDALEESVPA RGSALERADV ERCLLLQEIR DIVACDGAQR 240 RERHEWMVKW ADRMQAAGFE PVAMRADTVA QTVMLGQMLA GCSRAYRVIS SEKDVCFFIC 300 WRDIPMFSVS TWRAV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-26	1	312	105	378	Protein SCARECROW
5b3h_A	3e-26	1	312	104	377	Protein SCARECROW
5b3h_D	3e-26	1	312	104	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_74503.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188264.1	1e-174	scarecrow-like protein 3
TrEMBL	M0YYM9	0.0	M0YYM9_HORVV; Uncharacterized protein
STRING	MLOC_74503.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13716	13	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	2e-52	scarecrow-like 3