PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_74184.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 96aa    MW: 10763.2 Da    PI: 9.5423
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_74184.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.9e-081054445
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     WT+   +l+ +a + +  +   +W+ Iar +g g+++ +++ ++ 
     MLOC_74184.1 10 WTPKQNKLFEQALAVHDRDtpdRWHNIARAVGGGKSADDVRRYYE 54
                     *****************99************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.5E-6659IPR001005SANT/Myb domain
PfamPF002494.3E-61054IPR001005SANT/Myb domain
CDDcd001672.21E-61057No hitNo description
PROSITE profilePS500906.0171057IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.6E-41054IPR009057Homeodomain-like
SuperFamilySSF466892.73E-111064IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MASLSMSVGW TPKQNKLFEQ ALAVHDRDTP DRWHNIARAV GGGKSADDVR RYYELLVHDI  60
ARIEAGKVPF PAYRPPCPGP GHNASYEADR LKHLKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-2610961192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_74184.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519251e-135JF951925.1 Aegilops speltoides clone TaMYB42 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154620.12e-66protein RADIALIS-like 3
SwissprotF4JVB84e-28RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A453A0B83e-65A0A453A0B8_AEGTS; Uncharacterized protein
TrEMBLM0YXS59e-66M0YXS5_HORVV; Uncharacterized protein
STRINGMLOC_74184.11e-66(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-30RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]