PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_74058.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Protein Properties

Length: 293aa MW: 31554 Da PI: 10.3406

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_74058.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	95.5	3.5e-30	30	143	1	99
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+kv tpsdv+k++rlv+pk++ae++ +g+ +++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+v+F + MLOC_74058.1 30 FEKVVTPSDVGKLNRLVIPKQHAERYfpldgaaaalaaEGSGGKGMVLSFEDRAGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLGAGDTVLFGRG 126 99**************************999999996666799***********************************************943 PP .SS..SEE..EEEEE-S CS B3 86 .gr..sefelvvkvfrk 99 g+ +++l++ ++r+ MLOC_74058.1 127 vGDsaARGRLFIDFRRR 143 33324666777777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.4E-40	21	153	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.27E-29	27	126	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.72E-27	28	123	No hit	No description
SMART	SM01019	2.5E-21	30	144	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.831	30	144	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.2E-28	30	143	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MEFSPTAPAG GEESQRVCAS SSVVEKEHMF EKVVTPSDVG KLNRLVIPKQ HAERYFPLDG 60 AAAALAAEGS GGKGMVLSFE DRAGKAWRFR YSYWNSSQSY VMTKGWSRFV KEKRLGAGDT 120 VLFGRGVGDS AARGRLFIDF RRRRPAEAYS ATVAFPPPAT SSLSHRLPLL PSVPFCPWRR 180 DFGFGSTYGV ASAASGSNRH VLFLRQQVPA AVVLKSVPVR AAASVLEPPT RPMPKRVRLF 240 GVNLDSPDTE DGGACGVTPM VTSTLLQQLL PSPSSSTSST AGKERQCSLD LGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-55	23	143	1	113	B3 domain-containing transcription factor NGA1
5os9_B	2e-55	23	143	1	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	144	FRRRRP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_74058.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC074196	8e-90	AC074196.14 Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence.
GenBank	AP014966	8e-90	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179425.1	0.0	putative B3 domain-containing protein Os10g0537100
Swissprot	Q8LNN8	3e-99	Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBL	M0YXE5	0.0	M0YXE5_HORVV; Uncharacterized protein
STRING	MLOC_74058.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01030.1	5e-49	B3 family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]