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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_73706.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 189aa MW: 21061.2 Da PI: 9.0249 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.3 | 8.7e-06 | 28 | 77 | 5 | 32 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C....................... CS HLH 5 hnerErrRRdriNsafeeLrellPk.as.....................k 32 ++e E+ RR+r++ e+L +l+P + k MLOC_73706.3 28 KKESEKERRKRMKALCEKLASLIPReHCcsttdtmtqlgsldvgasyikK 77 6899********************96555444444444444444444430 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.55 | 23 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.5E-11 | 28 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.13E-8 | 29 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MEPVKAKPAR GGKRSRESGG TAVVLLEKKE SEKERRKRMK ALCEKLASLI PREHCCSTTD 60 TMTQLGSLDV GASYIKKLKE RVDELQRRMT SAQTLDTLRG DTSIPTPTTT TTTKSVVGSL 120 EEEKAREASA PVLQVRQHDD SSMEVRLICC MKRPIKLHEV ITIHEEEGAE IINANHSVAG 180 QKMFYTIHS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_73706.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248746 | 0.0 | AK248746.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf7p01, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177071.1 | 1e-105 | uncharacterized protein LOC109762608 | ||||
TrEMBL | A0A287Q0Q8 | 1e-134 | A0A287Q0Q8_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287Q0R3 | 1e-135 | A0A287Q0R3_HORVV; Uncharacterized protein | ||||
STRING | MLOC_73706.1 | 1e-136 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-07 | bHLH family protein |