PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_73614.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 282aa    MW: 30187.8 Da    PI: 8.0138
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_73614.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.48.9e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l d + ++G  +W+t++ + g+ R +k+c++rw +yl
     MLOC_73614.1 15 KGLWSPEEDQKLRDFIVRYGHSCWSTVPVKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding49.69.4e-1669113248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g ++ eE+e    +++ lG++ W+ Ia++++ gRt++++k++w++yl
     MLOC_73614.1  69 GMFSREEEETVMSLHAALGNK-WSQIAQHLP-GRTDNEVKNYWNSYL 113
                      56999****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-201065IPR009057Homeodomain-like
PROSITE profilePS5129413.9641062IPR017930Myb domain
SuperFamilySSF466891.1E-2713109IPR009057Homeodomain-like
SMARTSM007171.9E-101464IPR001005SANT/Myb domain
PfamPF002492.2E-121562IPR001005SANT/Myb domain
CDDcd001677.55E-101862No hitNo description
PROSITE profilePS5129424.34863117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2566116IPR009057Homeodomain-like
SMARTSM007174.2E-1367115IPR001005SANT/Myb domain
PfamPF002491.4E-1469113IPR001005SANT/Myb domain
CDDcd001673.57E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGCKSCQKPK AQHRKGLWSP EEDQKLRDFI VRYGHSCWST VPVKAGLQRN GKSCRLRWIN  60
YLRPGLKHGM FSREEEETVM SLHAALGNKW SQIAQHLPGR TDNEVKNYWN SYLKKRVEGA  120
RSPAKSAGSG APRSPTPSKS GCGRSTVNQP SSSGSSGPPE SSTSTFDESS SLTVPGAAAS  180
IRPHAPVLPK VMFADWLDMD MDYGTGLMAP SALASAFDGS PAQQGVSHQG SVQVEDLCGA  240
VDSLHGLGNG GVCWEFDAGQ IDMQGGGGFC DLLSVSEFLG IN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26151187109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_73614.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3705130.0AK370513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111O05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156817.11e-179transcription factor LAF1-like
TrEMBLF2E2Z00.0F2E2Z0_HORVV; Predicted protein
STRINGMLOC_73614.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.13e-61myb domain protein 18