PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_73300.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HSF
Protein Properties Length: 266aa    MW: 28276.7 Da    PI: 6.529
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_73300.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.68.3e-33151052101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y+++ed+ ++ +i w + +nsfvv d+  f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++ll++i 
  MLOC_73300.1  15 FVWKTYRMVEDPGTDGVIGWGKGNNSFVVADPFVFSQTMLPAHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHGSFLRGQTHLLRNIV 102
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+ 
  MLOC_73300.1 103 RRG 105
                   996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.2E-5211104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-3312104IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-3712104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.3E-2915104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-171538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-175365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-176678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAAAAASVGG GAAPFVWKTY RMVEDPGTDG VIGWGKGNNS FVVADPFVFS QTMLPAHFKH  60
NNFSSFVRQL NTYGFRKVDP DRWEFAHGSF LRGQTHLLRN IVRRGTAVAG GGGKRKDASA  120
ADLTGDDMTM VATEVVRLKK EQSTIDDRVA AMWRRVQETE RKPKQMLAFL LTIVGDRDTL  180
QRLVANSGNA ASGDQEPVEG GEKRARLLLD GDFGNVSAFG PDAVDFAGFY ADGDAFANVP  240
VPVEAAAGSG GGGAGCSFAF GVDSGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-251510920125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_73300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3544350.0AK354435.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1007F06.
GenBankAK3581360.0AK358136.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1069K14.
GenBankAK3703990.0AK370399.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2110B13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193636.11e-160heat stress transcription factor C-2b-like
SwissprotQ0DBL61e-120HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLF2CS330.0F2CS33_HORVV; Heat shock factor C2b
STRINGMLOC_73300.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-57heat shock transcription factor C1