PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MLOC_73193.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

GRAS

Protein Properties

Length: 776aa MW: 86964.4 Da PI: 7.627

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_73193.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	382.8	4e-117	401	772	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++ L++cA+av+++d + a++lL+++++++ +gd qRla++f+++L+arla+++s+ y+ l +++t+ s+ l+a++l++ ++P+ ++sh++ MLOC_73193.1 401 LRTILIHCAQAVAADDRRTANELLKQIKQHSKVNGDGSQRLAFCFAQGLEARLAGTGSQQYHRLVAKRTT---ASDMLKAYHLYFAACPFKRLSHFL 494 5789**********************************************************999999...9******************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 Nq+Il ++++++vHiiDf+i GlQWp+L++ L++R++gpp lRiTg++ pe+g +e++eetg+rLa++A+++gvpfe++ +a+++e+++ e MLOC_73193.1 495 SNQTILSMTKNASKVHIIDFGIYFGLQWPCLIRRLSKREGGPPILRITGIDVPEPGfrPTERIEETGQRLAEYAKKFGVPFEYQG-IASKWETIRAE 590 ***************************************************9*************************.7****** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 +L+v ++E+++Vn+ ++ +l de+v+++s+r++vL+++++++P ++++ + +++ + F +rf eal ++salfd+lea++pr++++r+ +Er l MLOC_73193.1 591 DLKVGKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALFHFSALFDMLEATVPRDDDQRRLIERDL 687 ********************************************************************************************* PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +gre+ nv+aceg++r+er et+++W+ r +aGF + pl+++++ +ak ++ ++ + + ++e+sg+l++gWk+r +++++ W+ MLOC_73193.1 688 FGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQDIVIKAKDKVKDIYHKDFVIDEDSGWLLQGWKGRIIYAITTWK 772 ****************************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.959	375	752	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-114	401	772	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 776 aa Download sequence Send to blast
MTSTPQPPRD LAHAAPPAQD LTGLGLGLAA ARSLRHRPPR QGSKPSGSVE HQTISGSLIH 60 SMIQFCGAPE YFMFNDPQPV ISPHVAAEPG PNAPVATLSR ATNTETDNPE DWEFISDESL 120 NYISRMLMEE DIDEKVSVYQ EESATLRATA KPFYDILGHK FPPSPDRTLM RWSLDSPSES 180 SSSGQAQSSS SVATSCSVGG SVHSYQCHDV GHSEQLQAHR GLCGRSSQPL VVPSSAVSDA 240 ADSLEDPLIT NGRIPEYLFE SLPTWDFRRG VEEAQKFLPG GHKLVIDLEA AGVSKPQEAV 300 KDIPFNVSKT EVLKAKKNRQ SEDLDLIEGR NIKQSAFCSD EPDDWVEMFD DLFRQTEKKA 360 TVLREKMRSE ASKNSQVIQT KGTTGVKTRG RKPTKNDVVD LRTILIHCAQ AVAADDRRTA 420 NELLKQIKQH SKVNGDGSQR LAFCFAQGLE ARLAGTGSQQ YHRLVAKRTT ASDMLKAYHL 480 YFAACPFKRL SHFLSNQTIL SMTKNASKVH IIDFGIYFGL QWPCLIRRLS KREGGPPILR 540 ITGIDVPEPG FRPTERIEET GQRLAEYAKK FGVPFEYQGI ASKWETIRAE DLKVGKDEVV 600 IVNCLYRFRN LIDETVAVDS PRNRVLNTIR QVNPAIFIHG IVNGSYSVPF FITRFREALF 660 HFSALFDMLE ATVPRDDDQR RLIERDLFGR EALNVIACEG SDRVERPETY KQWQVRNLRA 720 GFVQSPLNQD IVIKAKDKVK DIYHKDFVID EDSGWLLQGW KGRIIYAITT WKHKNS

Sequence ? help Back to Top

Protein Sequence Length: 776 aa Download sequence Send to blast

MTSTPQPPRD LAHAAPPAQD LTGLGLGLAA ARSLRHRPPR QGSKPSGSVE HQTISGSLIH  60
SMIQFCGAPE YFMFNDPQPV ISPHVAAEPG PNAPVATLSR ATNTETDNPE DWEFISDESL  120
NYISRMLMEE DIDEKVSVYQ EESATLRATA KPFYDILGHK FPPSPDRTLM RWSLDSPSES  180
SSSGQAQSSS SVATSCSVGG SVHSYQCHDV GHSEQLQAHR GLCGRSSQPL VVPSSAVSDA  240
ADSLEDPLIT NGRIPEYLFE SLPTWDFRRG VEEAQKFLPG GHKLVIDLEA AGVSKPQEAV  300
KDIPFNVSKT EVLKAKKNRQ SEDLDLIEGR NIKQSAFCSD EPDDWVEMFD DLFRQTEKKA  360
TVLREKMRSE ASKNSQVIQT KGTTGVKTRG RKPTKNDVVD LRTILIHCAQ AVAADDRRTA  420
NELLKQIKQH SKVNGDGSQR LAFCFAQGLE ARLAGTGSQQ YHRLVAKRTT ASDMLKAYHL  480
YFAACPFKRL SHFLSNQTIL SMTKNASKVH IIDFGIYFGL QWPCLIRRLS KREGGPPILR  540
ITGIDVPEPG FRPTERIEET GQRLAEYAKK FGVPFEYQGI ASKWETIRAE DLKVGKDEVV  600
IVNCLYRFRN LIDETVAVDS PRNRVLNTIR QVNPAIFIHG IVNGSYSVPF FITRFREALF  660
HFSALFDMLE ATVPRDDDQR RLIERDLFGR EALNVIACEG SDRVERPETY KQWQVRNLRA  720
GFVQSPLNQD IVIKAKDKVK DIYHKDFVID EDSGWLLQGW KGRIIYAITT WKHKNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	9e-50	405	772	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_73193.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK362796	0.0	AK362796.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010C13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020184239.1	0.0	scarecrow-like protein 9
Refseq	XP_020184240.1	0.0	scarecrow-like protein 9
Refseq	XP_020184241.1	0.0	scarecrow-like protein 9
TrEMBL	M0YUQ9	0.0	M0YUQ9_HORVV; Uncharacterized protein
STRING	MLOC_73193.3	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-172	GRAS family protein