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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_72940.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 430aa MW: 45330.8 Da PI: 7.1876 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.1 | 4.2e-05 | 327 | 364 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L MLOC_72940.6 327 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 364 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.642 | 315 | 364 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.57E-5 | 325 | 368 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.7E-8 | 325 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-11 | 325 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MGDNQLMHAA PAMYNGGGGG GAVSHGMWWN SNAAAGAVPA AACSTELAGF NTWPAGLSAG 60 GYDVAAADGG KQAKSCTTTA SSESPGNNSS ITFQETASIN DPAAAGFADW NNPYMSSGAG 120 NNMHGFLQVG HHDMSSRADQ QSMMNAVAAA PNNLDLALQG HQQHHHHQQQ DDHQRQQQLL 180 SSLGAPELLL SPNSPYGFQS SLLRSLIEPT GKPAPAAGAP PQYQYQQMGG QTGAREPLQF 240 TNNDAAFWNQ SAGFGMGMPA PPASDNAGVR AAKQASPAPR GANLALKTVL EGVGDSSSIV 300 AKKASGEPAF KKPRTEMPSP LPTFKVRKEK LGDRITALQQ LVSPFGKTDT ASVLHETIEY 360 IKFLHDQVGV LSAPYLKSGH HQHQVPQYLK VCPCTSMACL SVCFSWLLHA LLSLSLTHFP 420 LHHGYCMPCQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_72940.6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364303 | 0.0 | AK364303.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023J11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168093.1 | 0.0 | transcription factor bHLH112-like | ||||
TrEMBL | A0A287JL77 | 0.0 | A0A287JL77_HORVV; Uncharacterized protein | ||||
STRING | MLOC_72940.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.2 | 1e-33 | bHLH family protein |