 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
MLOC_72809.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
| Family |
NF-YC |
| Protein Properties |
Length: 282aa MW: 31441 Da PI: 5.3093 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MLOC_72809.2 | genome | IBSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 59.4 | 7.6e-19 | 6 | 85 | 18 | 97 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97
++++P rikki++adedv +i+ +Pvl+ska elf+ +l r+++ + e+ +t+ s +++++ + d++dfl ++
MLOC_72809.2 6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYNITIEKGVKTVSSSHLKQCIHSYDVYDFLKNVAS 85
5789***********************************************************************98765 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 282 aa
Download sequence Send
to blast |
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YNITIEKGVK 60
TVSSSHLKQC IHSYDVYDFL KNVASKVPDL GAPDSNADDK LGKRRKHGED ESEEETKRTR 120
NEAACHTSNG RGRGRGRGRG RRAGRGAERE IEHHELARTE FSNPGHLKVE TGDGFDTTET 180
KEHTPLSNAR ASLRNIDLNL DLADYEEDTV APQADPAAPV VIVASQVQTS GPSVSLLKEV 240
ETKDLLGWQL PEMNKMALDP VQFALSSNHR LEEEDEDYDN EE
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 130 | 139 | RGRGRGRGRG |
| 2 | 130 | 140 | RGRGRGRGRGR |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK250593 | 0.0 | AK250593.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf92h11, mRNA sequence. |
