PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_72614.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 229aa    MW: 25122.8 Da    PI: 4.554
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_72614.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.6e-05449554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  + erE+  Rd +N+ f+eL e+l  +     + + Ka iL+ +++ +++L
  MLOC_72614.4  4 KAEREKHKRDLLNDLFSELGEMLEAD----RQTNGKACILTDTTRILRDL 49
                  579********************997....57788888998888887776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.458149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-10369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-8568IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MVHKAEREKH KRDLLNDLFS ELGEMLEADR QTNGKACILT DTTRILRDLL SQLESLRQEN  60
STLQNESHYV TMERNELQDE NGVLRNEILE LQNELTMRPA GNPGWGHATA GSPHAVSHPA  120
STVFPSQQPP TIPSAVFPLQ QPLQQPTVME PPPPRELKLF PDAASDIECP EPSEDQEAAN  180
HIARPLARYP AQSASWPVSL GLPRMEDEQC SSGATGSSKE GSSSASSGD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_72614.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3570740.0AK357074.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1045H23.
GenBankAK3651650.0AK365165.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2031J07.
GenBankAK3657890.0AK365789.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2037M02.
GenBankAK3702140.0AK370214.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2106P13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557817.11e-117transcription factor BHLH062
SwissprotQ69V102e-73BH062_ORYSJ; Transcription factor BHLH062
TrEMBLM0YT371e-167M0YT37_HORVV; Uncharacterized protein
TrEMBLM0YT401e-167M0YT40_HORVV; Uncharacterized protein
STRINGMLOC_72614.21e-168(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.31e-20bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Wu H,Ye H,Yao R,Zhang T,Xiong L
    OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
    Plant Sci., 2015. 232: p. 1-12
    [PMID:25617318]