PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_72614.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 270aa MW: 29252.7 Da PI: 5.2045 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.7 | 5.8e-05 | 45 | 90 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + erE+ Rd +N+ f+eL e+l + + + Ka iL+ +++ +++L MLOC_72614.2 45 KAEREKHKRDLLNDLFSELGEMLEAD----RQTNGKACILTDTTRILRDL 90 679********************997....57788888998888887776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.18E-10 | 38 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-8 | 39 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.909 | 40 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 270 aa Download sequence Send to blast |
MVAMLPAARG DAAPATSAGA AEKLVHRGPG TDGKYKKKAP RMVHKAEREK HKRDLLNDLF 60 SELGEMLEAD RQTNGKACIL TDTTRILRDL LSQLESLRQE NSTLQNESHY VTMERNELQD 120 ENGVLRNEIL ELQNELTMRP AGNPGWGHAT AGSPHAVSHP ASTVFPSQQP PTIPSAVFPL 180 QQPLQQPTVM EPPPPRELKL FPDAASDIEC PEPSEDQEAA NHIARPLARY PAQSASWPVS 240 LGLPRMEDEQ CSSGATGSSK EGSSSASSGD |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_72614.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK357074 | 0.0 | AK357074.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1045H23. | |||
GenBank | AK365165 | 0.0 | AK365165.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2031J07. | |||
GenBank | AK365789 | 0.0 | AK365789.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2037M02. | |||
GenBank | AK370214 | 0.0 | AK370214.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2106P13. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003557817.1 | 1e-129 | transcription factor BHLH062 | ||||
Swissprot | Q69V10 | 6e-77 | BH062_ORYSJ; Transcription factor BHLH062 | ||||
TrEMBL | M0YT37 | 0.0 | M0YT37_HORVV; Uncharacterized protein | ||||
STRING | MLOC_72614.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G47640.3 | 2e-22 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|