|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
MLOC_72614.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
Family |
bHLH |
Protein Properties |
Length: 270aa MW: 29252.7 Da PI: 5.2045 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MLOC_72614.1 | genome | IBSC | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 14.7 | 5.8e-05 | 45 | 90 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+ erE+ Rd +N+ f+eL e+l + + + Ka iL+ +++ +++L
MLOC_72614.1 45 KAEREKHKRDLLNDLFSELGEMLEAD----RQTNGKACILTDTTRILRDL 90
679********************997....57788888998888887776 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010106 | Biological Process | cellular response to iron ion starvation |
GO:0055072 | Biological Process | iron ion homeostasis |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 270 aa
Download sequence Send
to blast |
MVAMLPAARG DAAPATSAGA AEKLVHRGPG TDGKYKKKAP RMVHKAEREK HKRDLLNDLF 60 SELGEMLEAD RQTNGKACIL TDTTRILRDL LSQLESLRQE NSTLQNESHY VTMERNELQD 120 ENGVLRNEIL ELQNELTMRP AGNPGWGHAT AGSPHAVSHP ASTVFPSQQP PTIPSAVFPL 180 QQPLQQPTVM EPPPPRELKL FPDAASDIEC PEPSEDQEAA NHIARPLARY PAQSASWPVS 240 LGLPRMEDEQ CSSGATGSSK EGSSSASSGD
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK357074 | 0.0 | AK357074.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1045H23. |
GenBank | AK365165 | 0.0 | AK365165.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2031J07. |
GenBank | AK365789 | 0.0 | AK365789.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2037M02. |
GenBank | AK370214 | 0.0 | AK370214.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2106P13. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Yilmaz A, et al.
GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] - Wu H,Ye H,Yao R,Zhang T,Xiong L
OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]
|