PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_7224.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | Dof | ||||||||
Protein Properties | Length: 442aa MW: 47816.2 Da PI: 7.3216 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.8 | 1.4e-39 | 102 | 161 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k+ MLOC_7224.2 102 PDKILPCPRCSSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSI 161 7899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-32 | 98 | 159 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.1E-32 | 104 | 160 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.761 | 106 | 160 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 108 | 144 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MGQFRAAAGG GGDCLIKLFG KTIPVPDAGA GDVDKDLQHR GSTTAEPKVQ ESAPQDSTGS 60 PPQPEVVDVE DPSAVKNSAA DQQEEEEEQS DTANQKEKLK KPDKILPCPR CSSMDTKFCY 120 YNNYNINQPR HFCKNCQRYW TAGGAMRNVP VGAGRRKSKS ISAASHFLQR IRAALPGDPL 180 CTPVNTNGTV LSFGSDASTL DVVSEQMKHM KELSSVTRTE NTDAPSVGSC AEGWAKGEES 240 SQMNSRERVA ADRSPNFAQH PCMNGAAMWP FSCAPSPAYF TPNVAIPFYP AAAAAYWGCM 300 VPGAWNTPWQ PQPQPQPQSQ CQSSSPPSAA SPVSTMSSCF QSRKHPRDGD EERDTKGNGK 360 VWVPKTIRID DVDEVARSSI WSLIGIKGDK VGTDDGRGCK LARVFDPKDE AKTTTHRVDN 420 SLPFSKGNPA ALSRSVNFQE RS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_7224.2 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252924 | 0.0 | AK252924.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf174o03, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166390.1 | 0.0 | cyclic dof factor 1-like | ||||
TrEMBL | M0YS30 | 0.0 | M0YS30_HORVV; Uncharacterized protein | ||||
STRING | MLOC_7224.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2099 | 37 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 1e-57 | cycling DOF factor 2 |