PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

G2-like

Protein Properties

Length: 403aa MW: 43144.7 Da PI: 6.1445

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_72007.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.4	2.1e-30	229	285	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGse.kAtPktilelmkvkgLtlehvkSHLQkYRla 56 kpr++W+peLH+rF++a++qLGGs+ +AtPk+i+elmkv+gLt+++vkSHLQkYRl+ MLOC_72007.2 229 KPRRCWAPELHRRFLQALQQLGGSHaVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 285 79*******************8747**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.542	226	287	IPR017930	Myb domain
SuperFamily	SSF46689	5.2E-16	227	287	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-27	227	288	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-25	229	285	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-6	231	283	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MEVEVQADRD GARRRLRDYL LALEEERRKI HVFQRELPLC LDLVTQTIEG MKSQMGGAAS 60 EETVSDHDGP VLEEFIPLKP SLSPSSSDDE TSTHAPAPVS NAKAETPPPT PTPTPETKKA 120 MPDWLQSAQL LTWSEPQQSS SLQKVLPCRP VALNATRTGG AFHPFEKEKQ PEAELPASST 180 TAPASSALVG DSGDKATSDT EVHDKDSKDA TEKDTDKDKE GQSSQPNRKP RRCWAPELHR 240 RFLQALQQLG GSHAVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTSRRP SSTAQSSGAA 300 TTTQPAPQFF VVGSCIWVPQ QEYAAAAAAA AAATDATNVA PGSANKVYAP TATLPSGVKP 360 HSKEQSSRRS EGPMSGDTGG VNSDSDNPAM SSSSSQTTSA GHP

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MEVEVQADRD GARRRLRDYL LALEEERRKI HVFQRELPLC LDLVTQTIEG MKSQMGGAAS  60
EETVSDHDGP VLEEFIPLKP SLSPSSSDDE TSTHAPAPVS NAKAETPPPT PTPTPETKKA  120
MPDWLQSAQL LTWSEPQQSS SLQKVLPCRP VALNATRTGG AFHPFEKEKQ PEAELPASST  180
TAPASSALVG DSGDKATSDT EVHDKDSKDA TEKDTDKDKE GQSSQPNRKP RRCWAPELHR  240
RFLQALQQLG GSHAVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTSRRP SSTAQSSGAA  300
TTTQPAPQFF VVGSCIWVPQ QEYAAAAAAA AAATDATNVA PGSANKVYAP TATLPSGVKP  360
HSKEQSSRRS EGPMSGDTGG VNSDSDNPAM SSSSSQTTSA GHP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_72007.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate. {ECO:0000269\|PubMed:23324170}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK361638	0.0	AK361638.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1145I13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198678.1	0.0	myb family transcription factor EFM-like
Refseq	XP_020198679.1	0.0	myb family transcription factor EFM-like
Swissprot	Q6Z869	1e-129	NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBL	A0A287H9U4	0.0	A0A287H9U4_HORVV; Uncharacterized protein
TrEMBL	A0A287HA17	0.0	A0A287HA17_HORVV; Uncharacterized protein
STRING	MLOC_72007.2	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6470	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	1e-53	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sawaki N, et al. A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice. Plant Cell Physiol., 2013. 54(4): p. 506-17 [PMID:23324170]