PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

MLOC_71770.4

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

C2H2

Protein Properties

Length: 258aa MW: 29488 Da PI: 4.9344

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_71770.4	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21	8.7e-07	4	27	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C Cg++F+++ +L rH r H MLOC_71770.4 4 YSCAVCGRRFPTRPDLARHFRQlH 27 99*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.79E-5	3	30	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.3E-4	3	30	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	13.131	4	32	IPR007087	Zinc finger, C2H2
SMART	SM00355	4.1E-4	4	27	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	6	27	IPR007087	Zinc finger, C2H2
CDD	cd06167	2.09E-7	47	154	No hit	No description
Gene3D	G3DSA:3.40.50.1010	6.8E-5	75	143	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
PVPYSCAVCG RRFPTRPDLA RHFRQLHERE RNKKLGRLRS LKGKKRQKFR ERYISGNTKY 60 QDAARELLTP KVGYGLDSEL RRAGVHVRTV PDKPQAADQA LKRQVKHAIA CGVDWVVLVS 120 DDSDFTDTVR NARAAALRMV VVGDGCRALG KVADIWLPWD SVQNGEVDEE MMRSGKVPQF 180 RYEEHDEQDD DDEFIVDWDT NELDDVVDDI VTSRTKVFGA TTMSAFAEED IVDGVLGLRQ 240 KEDDMLWSRD DEDEDGYL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_71770.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK359600	0.0	AK359600.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1099L22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020173465.1	0.0	uncharacterized protein LOC109759006
Refseq	XP_020173471.1	0.0	uncharacterized protein LOC109759006
TrEMBL	F2D6T8	0.0	F2D6T8_HORVV; Predicted protein (Fragment)
STRING	MLOC_71770.3	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-58	C2H2-like zinc finger protein