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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MLOC_71611.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family |
bHLH |
Protein Properties |
Length: 368aa MW: 40468.4 Da PI: 10.4034 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MLOC_71611.1 | genome | IBSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 40.2 | 5.9e-13 | 190 | 235 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L
MLOC_71611.1 190 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 235
799***********************6.....5***************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009269 | Biological Process | response to desiccation |
GO:0009611 | Biological Process | response to wounding |
GO:0009737 | Biological Process | response to abscisic acid |
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
GO:0009963 | Biological Process | positive regulation of flavonoid biosynthetic process |
GO:0010200 | Biological Process | response to chitin |
GO:0043619 | Biological Process | regulation of transcription from RNA polymerase II promoter in response to oxidative stress |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0051090 | Biological Process | regulation of sequence-specific DNA binding transcription factor activity |
GO:2000068 | Biological Process | regulation of defense response to insect |
GO:0005634 | Cellular Component | nucleus |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 368 aa
Download sequence Send
to blast |
RSRRRPQNQL QLQHQHNQGP FRRELNFSDF ASNPSVTVTP PFFKPESGEI LNFGADSTSR 60 RNPSPAPPAA TASLTTAPGS LFSQHTATVT APSNDAKNNP KRSMEATSRA SNTNHHQTAT 120 ANEGMLSFSS APTTRPSTGT GAPAKSESDH SDLEASVREV ESSRVVPPPE EKRPRKRGRK 180 PANGREEPLN HVEAERQRRE KLNQRFYALR AVVPNVSKMD KASLLGDAIS YINELRGKMT 240 ALESDKETLH SQIEALKKER DARPAAPSSS GMHDNGARCH AVEIEAKILG LEAMIRVQCH 300 KRNHPAAKLM TALRELDLDV YHASVSVVKD IMIQQVAVKM ATRVYSQEQL NAALYGRLAE 360 PGAAMQIR
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 4e-34 | 184 | 263 | 2 | 81 | Transcription factor MYC2 |
5gnj_B | 4e-34 | 184 | 263 | 2 | 81 | Transcription factor MYC2 |
5gnj_E | 4e-34 | 184 | 263 | 2 | 81 | Transcription factor MYC2 |
5gnj_F | 4e-34 | 184 | 263 | 2 | 81 | Transcription factor MYC2 |
5gnj_G | 4e-34 | 184 | 263 | 2 | 81 | Transcription factor MYC2 |
5gnj_I | 4e-34 | 184 | 263 | 2 | 81 | Transcription factor MYC2 |
5gnj_M | 4e-34 | 184 | 263 | 2 | 81 | Transcription factor MYC2 |
5gnj_N | 4e-34 | 184 | 263 | 2 | 81 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 171 | 179 | KRPRKRGRK |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK357816 | 0.0 | AK357816.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1062G16. |
GenBank | AK359813 | 0.0 | AK359813.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1103K10. |
GenBank | AK360465 | 0.0 | AK360465.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1118K08. |