PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_71611.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 368aa    MW: 40468.4 Da    PI: 10.4034
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_71611.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.25.9e-13190235454
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  MLOC_71611.1 190 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 235
                   799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.39186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-12189236No hitNo description
SuperFamilySSF474592.36E-18189260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-18190257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10190235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-15192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
RSRRRPQNQL QLQHQHNQGP FRRELNFSDF ASNPSVTVTP PFFKPESGEI LNFGADSTSR  60
RNPSPAPPAA TASLTTAPGS LFSQHTATVT APSNDAKNNP KRSMEATSRA SNTNHHQTAT  120
ANEGMLSFSS APTTRPSTGT GAPAKSESDH SDLEASVREV ESSRVVPPPE EKRPRKRGRK  180
PANGREEPLN HVEAERQRRE KLNQRFYALR AVVPNVSKMD KASLLGDAIS YINELRGKMT  240
ALESDKETLH SQIEALKKER DARPAAPSSS GMHDNGARCH AVEIEAKILG LEAMIRVQCH  300
KRNHPAAKLM TALRELDLDV YHASVSVVKD IMIQQVAVKM ATRVYSQEQL NAALYGRLAE  360
PGAAMQIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-34184263281Transcription factor MYC2
5gnj_B4e-34184263281Transcription factor MYC2
5gnj_E4e-34184263281Transcription factor MYC2
5gnj_F4e-34184263281Transcription factor MYC2
5gnj_G4e-34184263281Transcription factor MYC2
5gnj_I4e-34184263281Transcription factor MYC2
5gnj_M4e-34184263281Transcription factor MYC2
5gnj_N4e-34184263281Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171179KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_71611.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3578160.0AK357816.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1062G16.
GenBankAK3598130.0AK359813.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1103K10.
GenBankAK3604650.0AK360465.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1118K08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165313.10.0transcription factor MYC2-like
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLF2D7F10.0F2D7F1_HORVV; Predicted protein
STRINGMLOC_71611.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.15e-75bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]