PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_71592.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 285aa MW: 30746.3 Da PI: 5.6279 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.7 | 6.5e-11 | 240 | 281 | 3 | 44 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44 + hn ErrRRdriN+++ L+el+P++ k ++ ls a++L MLOC_71592.5 240 QVHNLSERRRRDRINEKMRALQELVPHCNKVRNSNLSAASVL 281 56*************************977777778888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.90E-9 | 234 | 283 | No hit | No description |
SuperFamily | SSF47459 | 1.2E-10 | 235 | 282 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.814 | 237 | 285 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.3E-11 | 240 | 282 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-8 | 240 | 282 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MNQQFVPADW SGNMGDALPP LSGEDGGLVE LLRCSGHVVM QSQAVRELEA TPWFQYPIDD 60 SLEEKDLFSE IFGRMPADGA GTPWKEEDQE RGAADAVTAL RSVLMPPPLL LTDKAGLHGH 120 GPPVSEAGES SVVTMAFGRP CGGSNEAQTP HVSDAAGDDR VLLPLSSKEA RDARSYHSAS 180 ATLTTSSAWS RPSGASKRKQ CDGAESPGEV MQHDVESESA NVTCETAQKP ATAKRRRAAQ 240 VHNLSERRRR DRINEKMRAL QELVPHCNKV RNSNLSAASV LNLLI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 234 | 249 | RRRAAQVHNLSERRRR |
2 | 245 | 250 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_71592.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360963 | 0.0 | AK360963.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1129K08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189473.1 | 1e-126 | transcription factor PIF4-like | ||||
TrEMBL | M0YQ18 | 0.0 | M0YQ18_HORVV; Uncharacterized protein | ||||
STRING | MLOC_71592.3 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 4e-16 | phytochrome interacting factor 3 |