PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_71463.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 563aa    MW: 59163.9 Da    PI: 4.8915
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_71463.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.5e-30317376159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   ++Dg++WrKYGqK+ kg+++pr+YYrCt a  Cpv+k+v+r++ed +++++tYeg+Hnh+
  MLOC_71463.2 317 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApACPVRKQVQRCQEDMSILITTYEGTHNHP 376
                   58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-32302378IPR003657WRKY domain
SuperFamilySSF1182906.41E-27310378IPR003657WRKY domain
PROSITE profilePS5081128.162312378IPR003657WRKY domain
SMARTSM007744.7E-37317377IPR003657WRKY domain
PfamPF031068.8E-27318376IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MSSSKRKRAD IDLERRDDDG DDGSGDHQPV EAAPAPPRLQ KEGQIKEGEA QAKEVVEVVV  60
DRGGDASKEE IKYGTQQEGL MEEDKQSAAA AAGSDGGGGV DDEENDGPGT RAEDKHMVEA  120
APGDGNGDGD HDHTAMAQDE LSTMQEEMEK MKEENKMLRR VVDRTVRDYY ELQTKLAAYQ  180
KQPADQEPKE TEVFLSLGGT APAVAEAKSK EEQAARRPSV GSDDTDDGRE GLGLSLSLRT  240
SSYEDETRHD VVDGGAPDIV SDVGKARGYA LLESSRMSPP ASGDVAAAGG IAGQQGVNAA  300
NRKTRVSVRV RCQGPTMNDG CQWRKYGQKV AKGNPCPRAY YRCTVAPACP VRKQVQRCQE  360
DMSILITTYE GTHNHPLPVG ATAMASTATA GTGAATFMLL SSTSSDAAVS SGPPPASSSY  420
LSPYLQLNSS SQYHSSVSPL VSGTMGGGGA QHLSMFGHSS ALAAQPATHL KYPWPPNPSH  480
GGAAGLGGSK RPFWGNGGVD DVRPTAALPD NAGTMASDPN QFSAAIATAI SNVIGKDGQT  540
AARRKEGESS NKWGVVESLP PHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-21304380176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_71463.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3632470.0AK363247.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013L09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173302.10.0probable WRKY transcription factor 9
TrEMBLA0A287UUY40.0A0A287UUY4_HORVV; Uncharacterized protein
STRINGMLOC_71463.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.13e-47WRKY DNA-binding protein 9