PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

MYB

Protein Properties

Length: 373aa MW: 40198.4 Da PI: 4.4798

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_71418.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	9.9e-17	43	90	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed +l+ +++++G +W++ +r g+ R++k+c++rw +yl MLOC_71418.2 43 RGSWTPQEDMRLIAYIQKHGHANWRALPRQAGLLRCGKSCRLRWINYL 90 89****************************99**********97 PP
2	Myb_DNA-binding	46.9	6.5e-15	96	141	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ ++++ +lG++ W++Ia++++ gRt++++k+ w+++l MLOC_71418.2 96 RGNFTADEEATVIKLHGLLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 141 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-22	34	93	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.211	38	90	IPR017930	Myb domain
SuperFamily	SSF46689	8.24E-29	40	137	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-12	42	92	IPR001005	SANT/Myb domain
Pfam	PF00249	8.4E-15	43	90	IPR001005	SANT/Myb domain
CDD	cd00167	4.35E-10	45	90	No hit	No description
PROSITE profile	PS51294	23.727	91	145	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-24	94	144	IPR009057	Homeodomain-like
SMART	SM00717	9.7E-13	95	143	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-13	96	141	IPR001005	SANT/Myb domain
CDD	cd00167	8.73E-10	98	141	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MLPTASWTRP NRARTSEQTA EWSRAADMGR GRAPCCAKVG LNRGSWTPQE DMRLIAYIQK 60 HGHANWRALP RQAGLLRCGK SCRLRWINYL RPDLRRGNFT ADEEATVIKL HGLLGNKWSK 120 IAACLPGRTD NEIKNVWNTH LKKKASEQKP GPGVGQSKGE AADGDPDTPV PSLSSASSSM 180 TTSEGSNGGG AGEQCGTSNE PDTTDLPSPL ELELELEPVM DILDMLADAA PTEALATAAP 240 MPTSSCSSSS PTTCGGGAEE LLELPDYIDM DADIWSIIDD DTARLQQQQG DATVPCRSTT 300 KASPEEEGTD WWLEDLEKEL GLWGPAGESQ PQVGPHDQIG YPGQLYETEG DVAMGPSSYP 360 QSRSDHHQAS SSE

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MLPTASWTRP NRARTSEQTA EWSRAADMGR GRAPCCAKVG LNRGSWTPQE DMRLIAYIQK  60
HGHANWRALP RQAGLLRCGK SCRLRWINYL RPDLRRGNFT ADEEATVIKL HGLLGNKWSK  120
IAACLPGRTD NEIKNVWNTH LKKKASEQKP GPGVGQSKGE AADGDPDTPV PSLSSASSSM  180
TTSEGSNGGG AGEQCGTSNE PDTTDLPSPL ELELELEPVM DILDMLADAA PTEALATAAP  240
MPTSSCSSSS PTTCGGGAEE LLELPDYIDM DADIWSIIDD DTARLQQQQG DATVPCRSTT  300
KASPEEEGTD WWLEDLEKEL GLWGPAGESQ PQVGPHDQIG YPGQLYETEG DVAMGPSSYP  360
QSRSDHHQAS SSE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-24	41	145	25	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269\|PubMed:7920701}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_71418.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK111933	1e-125	AK111933.1 Oryza sativa Japonica Group cDNA clone:001-017-B10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189024.1	1e-170	myb-related protein Zm1-like
Swissprot	P20024	1e-115	MYB1_MAIZE; Myb-related protein Zm1
TrEMBL	A0A287UI13	0.0	A0A287UI13_HORVV; Uncharacterized protein
STRING	MLOC_71418.2	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2154	37	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	2e-65	myb domain protein 63

Publications ? help Back to Top
Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701]