PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_71305.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 137aa    MW: 15352.6 Da    PI: 6.8865
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_71305.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.91.4e-1126931386
                  TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
            B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                  +++ ++p +f ++        +t ++   +g sW + +  +++ +   l++GW +F+ +n+L++gD +vF+l +
  MLOC_71305.2 26 RNLQIIPTHFQRRLPAR----RTAVVLRCRGSSWIMSY--SGHTKLKNLAAGWADFAIDNRLQVGDGCVFELLS 93
                  66678888888776432....47889999*********..88888888***********************653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023622.8E-92693IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-1327112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-122793IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.29230114IPR003340B3 DNA binding domain
CDDcd100171.61E-1030112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MIRCCNNCGS FILSWSCPEL LFFLRRNLQI IPTHFQRRLP ARRTAVVLRC RGSSWIMSYS  60
GHTKLKNLAA GWADFAIDNR LQVGDGCVFE LLSGDARDGG EGEVVLEVQV LRGHLPEPED  120
LTTKGESADE PMANYHC
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_71305.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184539.16e-51B3 domain-containing protein Os06g0112300-like
SwissprotQ9LHY97e-27Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBLM0YNZ05e-98M0YNZ0_HORVV; Uncharacterized protein
STRINGMLOC_71305.13e-75(Hordeum vulgare)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]