PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_71056.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 420aa    MW: 46383.1 Da    PI: 8.1577
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_71056.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08228270754
                   HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   + E++RR+r+ ++f  L  l+P++     +K + a++   A+eYI++L
  MLOC_71056.1 228 KKEKQRRQRLSEKFTALMLLIPNR-----TKEDRATVIFDAIEYIQEL 270
                   57*********************9.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.414221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-6227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-6228270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-10230290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-8230270No hitNo description
Gene3DG3DSA:4.10.280.101.1E-8230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MQLLLYKCPF RRPNPHGTNR FLLPNVAVAL LYNPKLTLLL PLPLTTSALH VRLWQPTLGK  60
HPLKTNLALK MYHPQCELLM PHDHEGLDMD AGQSHHLAAG SAVPAELNFH LLSYVDTAIS  120
PQQPTVEYFF GGTDQPQSQF EQLAANHQAM TVLRDYYGQY PPTADAYLPG GPRTGSSSLV  180
FGAAEEESAY MVGGFQCSPK PRTGGGRKRS RGAGSSFHGF PANGGVEKKE KQRRQRLSEK  240
FTALMLLIPN RTKEDRATVI FDAIEYIQEL GRTVEELTLL VEKKRGRREH QGDVVDPAPL  300
VMTGEGECSA GEVTAAVMPA MPAPPQPIRS TYIQRKSKET FVDVRIVEDE VNIKLTKRRR  360
DGCLAAASRA LDDLHLDLVH LSGGKIGDCH IYMFNTKIHP GSPVFASAVA SKLIEVVDEY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205211GRKRSRG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_71056.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175517.10.0transcription factor TIP2-like
SwissprotQ5JNS01e-157TIP2_ORYSJ; Transcription factor TIP2
TrEMBLA0A287VQS20.0A0A287VQS2_HORVV; Uncharacterized protein
STRINGMLOC_71056.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.21e-35bHLH family protein