PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

MYB

Protein Properties

Length: 251aa MW: 27465.9 Da PI: 8.4193

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_71041.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.1e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++ G g+W++ ++ g+ R++k+c++rw +yl MLOC_71041.1 14 KGAWTKEEDQRLIAYIRANGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	55.7	1.1e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T +Edel+++++ +lG++ W++Ia ++ gRt++++k++w+++ MLOC_71041.1 67 RGNFTDDEDELIIRLHSLLGNK-WSLIAGQLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-22	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.077	9	61	IPR017930	Myb domain
SMART	SM00717	8.0E-13	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.58E-28	13	108	IPR009057	Homeodomain-like
Pfam	PF00249	9.6E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	8.39E-11	16	61	No hit	No description
PROSITE profile	PS51294	28.1	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.0E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	9.3E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	4.95E-13	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MGRSPCCEKE HTNKGAWTKE EDQRLIAYIR ANGEGCWRSL PKAAGLLRCG KSCRLRWMNY 60 LRPDLKRGNF TDDEDELIIR LHSLLGNKWS LIAGQLPGRT DNEIKNYWNT HIKRKLLSRG 120 MDPHTHRPLT AVIDAAAPTR PAQSAGRGGG APTTMFALPT KQQQPPVPVE SSDDDGSSGA 180 TSTGEPRCPD LNLDLSVGPP AADTPTSHPV CLCRHLGFRG GEACSCRQAD SAGSQGGGFR 240 YFRPLEEGQY I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-29	14	116	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_71041.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	X70876	0.0	X70876.1 H.vulgare myb2 mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020151216.1	1e-154	myb-related protein 308-like
Swissprot	P81393	1e-91	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A287G8K9	0.0	A0A287G8K9_HORVV; Uncharacterized protein
TrEMBL	Q06944	0.0	Q06944_HORVU; MybHv5
STRING	MLOC_71041.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	3e-88	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]