![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_70931.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 25134 Da PI: 4.1425 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52 | 1.8e-16 | 31 | 79 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr ++ +g Wv+eIr p g+++r++lg++ tae Aa+a++aa ++l+g MLOC_70931.1 31 YKGVRMRS-WGAWVSEIRAP---GQKTRIWLGSHSTAEAAARAYDAALLCLKG 79 9****998.**********8...557************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.7E-28 | 30 | 95 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-16 | 30 | 90 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.732 | 30 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-26 | 30 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-8 | 31 | 42 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-9 | 31 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.41E-14 | 31 | 90 | No hit | No description |
PRINTS | PR00367 | 4.3E-8 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
MVKTAAAGSN GNGVAVKQQQ QQQLGGKMRT YKGVRMRSWG AWVSEIRAPG QKTRIWLGSH 60 STAEAAARAY DAALLCLKGG AAAADLNFPV RFPFDLPAAA MSPKSIQRVA AAAAAAGAGA 120 SVVDFACADD SASADAVDFA GADDAITPDY CSSSSNASPV SSPETASSGG AADLDGVDLL 180 GYGYSQCSLA EIEAFFQSPK CMEYAMMDPC SAFFAPAPTA MAMEDECSWE EEGDIALWSF 240 SMD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-11 | 24 | 92 | 8 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_70931.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK370870 | 0.0 | AK370870.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2118P17. | |||
GenBank | AK376100 | 0.0 | AK376100.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3114M17. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156807.1 | 1e-125 | ethylene-responsive transcription factor ERF014-like | ||||
TrEMBL | F2E3Z6 | 1e-174 | F2E3Z6_HORVV; Predicted protein | ||||
STRING | MLOC_70931.1 | 1e-175 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3197 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G44830.1 | 5e-16 | ERF family protein |