PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70409.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 465aa    MW: 49815.4 Da    PI: 8.0457
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70409.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13318364455
                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  MLOC_70409.1 318 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 364
                   799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-3940217IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.38E-15317368No hitNo description
Gene3DG3DSA:4.10.280.104.4E-16317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-16317369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-11318364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-16320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MSWSDTDAAL FAAVLGQDAA HHLATTPPHL DGPASSSPEL QARLCDLVER GGAWTYGIYW  60
QESRGGRPVL GWGDGHCRDG PAEDAGAATD RSLARKRALL RLHALYGGGD EDGADYALRL  120
DRVTGAEMYF LASMYFSFPG DAGGPGRALT SGHHAWAAVD PHLPGSAPGW YVRASLAQSA  180
GLRTVVFLPC KGGVLELGSV VAMRENPEVL RAIQSAFHVE ADHMRIFGQD VSRSPPMPPV  240
QVQPTGCDAT WALRLGGQAM VARPAKKEVV VVKPKPQEPP KTISFSNAVD AQKQAGGDER  300
RPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV VPKISKMDKA SLLSDAIAYI  360
QELEGRLRGG AARPEASPSV EVKTMQDEVV LRVSTPLDAH PISGAFNAVR DSQLSLSVVA  420
SDMAVADDTV THTLVVRSAG PDRLTAEAVL AAISRGMMMS ATPSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-26312398283Transcription factor MYC2
5gnj_B2e-26312398283Transcription factor MYC2
5gnj_E2e-26312398283Transcription factor MYC2
5gnj_F2e-26312398283Transcription factor MYC2
5gnj_G2e-26312398283Transcription factor MYC2
5gnj_I2e-26312398283Transcription factor MYC2
5gnj_M2e-26312398283Transcription factor MYC2
5gnj_N2e-26312398283Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299307RRPRKRGRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70409.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3559950.0AK355995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1028K13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183019.10.0transcription factor bHLH13-like
TrEMBLM0YL230.0M0YL23_HORVV; Uncharacterized protein
STRINGMLOC_70409.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.15e-84ABA-inducible BHLH-type transcription factor