PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70258.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 378aa    MW: 40991.2 Da    PI: 5.629
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70258.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407.1e-13213258555
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h + Er+RR+++N++f+ Lr+llP++      K +K ++L+kA  Y+k L+
  MLOC_70258.3 213 HMMSERKRREKLNDSFHALRSLLPPC-----SKKDKTTVLTKAAGYLKTLE 258
                   7789*********************9.....699**************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-17210276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10213258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.71E-13213262No hitNo description
Gene3DG3DSA:4.10.280.104.7E-18213275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-13214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDDVWCSLDM AADIAGLHSA LADPFWPADL DLMVSTDEVE GMADMDASGI YVGGGDDRFM  60
LPSSTTSSLS SKRSLSQDSG GSSGSGSFTL DLADASRYQA PAPPAPHNPL AGAADHDDEA  120
IMRAMMAVMS SSSASPSSSA SSHPQPFCRD RDSSMQQQPT AMAPQLRGGG PSGHVMVKSS  180
LSMSPERSSS GGRGQQQEDP TRAASNNTGQ LYHMMSERKR REKLNDSFHA LRSLLPPCSK  240
KDKTTVLTKA AGYLKTLEAQ VSDLEEKNSK LEKHIPSSDS EEDVPHQQRR QRAKVQITKA  300
ASSDEVVNLT VMVMVECDVV ELVLRILECL RWMEQVSVMS VDADTYSPQV LLKAIASIKL  360
RIMVRARAWI SFVSRFVF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216221ERKRRE
2217222RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70258.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3686840.0AK368684.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2078B02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150412.10.0putative transcription factor bHLH041
TrEMBLF2DXR60.0F2DXR6_HORVV; Predicted protein
STRINGMLOC_70258.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-23bHLH family protein