PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

ERF

Protein Properties

Length: 330aa MW: 35247.4 Da PI: 5.1996

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_69987.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.1	5.2e-19	141	192	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+ +g r++lg+++t eAa+a+++a+ +++g+ MLOC_69987.1 141 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTSVEAARAYDRAAFRMRGA 192 8******.******96554..************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	5.0E-32	140	200	IPR001471	AP2/ERF domain
CDD	cd00018	1.59E-29	141	200	No hit	No description
SuperFamily	SSF54171	2.42E-22	141	200	IPR016177	DNA-binding domain
Pfam	PF00847	4.3E-14	141	191	IPR001471	AP2/ERF domain
SMART	SM00380	1.6E-36	141	205	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.105	141	199	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-13	142	153	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-13	181	201	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010200	Biological Process	response to chitin
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MEFAGEADGF ALDLIREHLL GGDGGVQATA SHDQGPFCDD GTFPVQQPMF FPQQQQEEMQ 60 GYMDLANQYL NSCPAADVPE AAFRAPEPVM IQFGGEPSPV TAPSSHLTIS VPAKGSFRWA 120 GTAAAAAPPP PAPAPVEDFR KYRGVRQRPW GKYAAEIRDP KRRGSRVWLG TYDTSVEAAR 180 AYDRAAFRMR GAKAILNFPN EVGTRGAELW APPPPPVPAS QTAGATNKRK RSHEEDPDVE 240 VTGVVINKAV KTEAPSPSSA HVSWDTPSSV SRETASSTLT SAATTPEGGL PPTLSSSGWE 300 QYWEALMGGM PLLSPLSPHP ALGFPQLTVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	4e-26	140	204	4	68	ATERF1
3gcc_A	4e-26	140	204	4	68	ATERF1
5wx9_A	7e-26	141	201	14	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	232	KRKRSH

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00549	DAP	Transfer from AT5G47230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_69987.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT962211	0.0	KT962211.1 Hordeum vulgare cultivar CI9831 ERF5 mRNA, complete cds.
GenBank	KT962212	0.0	KT962212.1 Hordeum vulgare cultivar AC Metcalfe ERF5 mRNA, complete cds.
GenBank	KT962213	0.0	KT962213.1 Hordeum vulgare cultivar Zheddar ERF5 mRNA, complete cds.
GenBank	KT962214	0.0	KT962214.1 Hordeum vulgare cultivar CDC Copeland ERF5 mRNA, complete cds.
GenBank	KT962215	0.0	KT962215.1 Hordeum vulgare cultivar H106371 ERF5 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020178351.1	0.0	ethylene-responsive transcription factor ERF105-like
TrEMBL	A0A166NHD4	0.0	A0A166NHD4_HORVU; ERF5
STRING	MLOC_69987.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47230.1	1e-33	ethylene responsive element binding factor 5