PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MLOC_698.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 306aa MW: 34576 Da PI: 4.7151

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_698.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.3	9.2e-12	232	305	1	70
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkk 70 +f+n+Y++ +GF v++ + k++ krn+eit+ t++C+k+gk++e + + + r++ + +t+Ck l+++k MLOC_698.2 232 EFFNFYSHVAGFCVTTVAVKRTsskKRNNEITQITMKCNKHGKTKEVEAEsVVPIRKSIVIAKTNCKVVLVLSK 305 6*********8876655554455999************9988775788899999*******99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-10	232	305	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MEEEEQGHEG GRITSREDTP YMIWNTQEPT NASNGTGRNI KGQSLYLEHD EIDFLESGSC 60 SYTELLHGGS FSYTELLHAQ MYQSMTNIME CDRTDLDNKF NTPEAGEYIH SEQNESPTNQ 120 AGAENPWNIS LFDSMELDKV NDEQNYQQPS TFAREEQQFP SEESEGTAAS EKQKGTHNSR 180 QGQEEEFLNE VDIHNFLGNE EASAKEGNLR NVDSVTKPAV GMRFKSKQEG QEFFNFYSHV 240 AGFCVTTVAV KRTSSKKRNN EITQITMKCN KHGKTKEVEA ESVVPIRKSI VIAKTNCKVV 300 LVLSKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_698.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A287XMR2	0.0	A0A287XMR2_HORVV; Uncharacterized protein
STRING	MLOC_698.2	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP23066	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	5e-06	FAR1-related sequence 2