PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

MLOC_698.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 277aa MW: 31345.5 Da PI: 4.8554

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_698.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.5	7.7e-12	203	276	1	70
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkk 70 +f+n+Y++ +GF v++ + k++ krn+eit+ t++C+k+gk++e + + + r++ + +t+Ck l+++k MLOC_698.1 203 EFFNFYSHVAGFCVTTVAVKRTsskKRNNEITQITMKCNKHGKTKEVEAEsVVPIRKSIVIAKTNCKVVLVLSK 276 6*********8876655554455999************9988775788899999*******99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-10	203	276	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MEEEEQGHEG GRITSREDTP YMIWNTQSGS CSYTELLHGG SFSYTELLHA QMYQSMTNIM 60 ECDRTDLDNK FNTPEAGEYI HSEQNESPTN QAGAENPWNI SLFDSMELDK VNDEQNYQQP 120 STFAREEQQF PSEESEGTAA SEKQKGTHNS RQGQEEEFLN EVDIHNFLGN EEASAKEGNL 180 RNVDSVTKPA VGMRFKSKQE GQEFFNFYSH VAGFCVTTVA VKRTSSKKRN NEITQITMKC 240 NKHGKTKEVE AESVVPIRKS IVIAKTNCKV VLVLSKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_698.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A287XMR2	1e-175	A0A287XMR2_HORVV; Uncharacterized protein
STRING	MLOC_698.2	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	5e-06	FAR1-related sequence 2