PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

HD-ZIP

Protein Properties

Length: 250aa MW: 27649.7 Da PI: 4.6892

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_69710.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61	1.8e-19	27	79	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +f++eq++ Le++F+ + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k MLOC_69710.1 27 KKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 79 456*************************************************9 PP
2	HD-ZIP_I/II	122.8	1.6e-39	26	117	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+r+s+eq+k+LE++F +++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal ++ ++L+k++++L ++l++ MLOC_69710.1 26 RKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLERQYAALRDDYDALLSSYDQLKKDKQALVNQLEK 117 8***************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.8E-19	22	81	IPR009057	Homeodomain-like
SMART	SM00389	3.6E-16	24	85	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.05E-18	24	83	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.763	26	81	IPR001356	Homeobox domain
CDD	cd00086	3.91E-17	26	82	No hit	No description
Pfam	PF00046	8.0E-17	27	79	IPR001356	Homeobox domain
PRINTS	PR00031	8.3E-6	52	61	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	56	79	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.3E-6	61	77	IPR000047	Helix-turn-helix motif
Pfam	PF02183	4.0E-13	81	122	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MEQGEEDGDW MMEPASGKKG GVMIDRKKRF SEEQIKSLES MFATQTKLEP RQKLQLAREL 60 GLQPRQVAIW FQNKRARWKS KQLERQYAAL RDDYDALLSS YDQLKKDKQA LVNQLEKLAE 120 MLREPGGAKC GDNAGAADRD DVRLAVAGMS MKDEFADAAG ASKLYSASAE GCGGSGKLSL 180 FGEDDDDAGL FLRPSLQLPT AHDGGFTASG PAEYQQQSPS SFPFHSSWPS SATEQTCSSS 240 QWWEFESPSE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00650	PBM	Transfer from LOC_Os09g35910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_69710.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK361212	0.0	AK361212.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1135C21.
GenBank	AK376953	0.0	AK376953.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3144J23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020148448.1	1e-165	homeobox-leucine zipper protein HOX6-like
Swissprot	Q651Z5	1e-93	HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
Swissprot	Q9XH35	1e-93	HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBL	M0YIP2	0.0	M0YIP2_HORVV; Uncharacterized protein
STRING	MLOC_69710.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7873	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	9e-43	homeobox 7

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]