PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_69508.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family YABBY
Protein Properties Length: 79aa    MW: 8893.03 Da    PI: 8.2345
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_69508.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY454.2e-14230134162
         YABBY 134 keeiqrikasnPdishreafsaaaknWah 162
                   +eeiqrika+ Pd  hreafs+aaknWa 
  MLOC_69508.2   2 REEIQRIKAAKPDTPHREAFSMAAKNWAK 30 
                   8***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.3E-13131IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MREEIQRIKA AKPDTPHREA FSMAAKNWAK CDPRCSSTVS TSNSASEPRI VVPGPQLQER  60
ATEQVVESFD IFKQMERSA
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_69508.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3737041e-113AK373704.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3041B18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156144.16e-48protein DROOPING LEAF-like isoform X1
RefseqXP_020156145.15e-48protein DROOPING LEAF-like isoform X2
SwissprotQ76EJ06e-34YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A287I8M69e-50A0A287I8M6_HORVV; Uncharacterized protein
TrEMBLA0A287PGP74e-49A0A287PGP7_HORVV; Uncharacterized protein
TrEMBLA0A287PGQ74e-49A0A287PGQ7_HORVV; Uncharacterized protein
TrEMBLA0A287PH401e-49A0A287PH40_HORVV; Uncharacterized protein
TrEMBLA0A287PHR24e-49A0A287PHR2_HORVV; Uncharacterized protein
TrEMBLA0A287PHR94e-49A0A287PHR9_HORVV; Uncharacterized protein
STRINGMLOC_69508.21e-51(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.11e-12YABBY family protein