PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_6900.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 509aa    MW: 55975.8 Da    PI: 5.2426
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_6900.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.7e-14336381454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h + Er+RR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L
  MLOC_6900.1 336 SHVMQERKRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQL 381
                  899***********************8.....8*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-103677IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.876332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-18335394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-14336386No hitNo description
Gene3DG3DSA:4.10.280.101.7E-17336393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-12336381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-17338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MIMAKPTRIC AIHFFPSLSD DIFLFMWCTT NFGGFELQSA GIKTVLCIPI VDGVLEIGTT  60
EKVEEDIGLV QYAMAIFMDQ QETHMIPSIC HSNQTSHIDQ QSFQTQRKAH TGDLKPEPNK  120
LNPAYEDDEM EYDDDDEIDA ECASVSETNA GRDYCRHGPP NIAVNADHAT HDAAGSSELM  180
QVEMSERARD GCSSNLGDEI QMLMVCQNGA NDEPWHFLYE ELCGGYPQSS AAGENQATAE  240
NAHYAQTVSL ILHRNNALGQ ADGRSTGSYL AVSHQSSFSR WDATASIHGR TVTGGINRQK  300
MLKSVLLFFS AACNRPPGDL RCDEGGARRE VDFGASHVMQ ERKRREKLNE RFIILRSLVP  360
FVTKMDKASI LGDTIEYVKQ LTKRVQDLES SAARQQGSSE KRAVLTGMEG ASSSSSGSSS  420
STPVATDVQV SIIESDALLE LRCPDRRGLL VTIMQALQEQ LRLEVTSVQA SSDHGVLLAE  480
MRAKVRELHG RRSSISQVKR AIHLIISSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340345ERKRRE
2341346RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_6900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155869.10.0basic helix-loop-helix protein A
TrEMBLM0YG630.0M0YG63_HORVV; Uncharacterized protein
STRINGMLOC_6900.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.19e-46bHLH family protein