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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MLOC_68598.4 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family |
bHLH |
Protein Properties |
Length: 497aa MW: 53649.7 Da PI: 6.998 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MLOC_68598.4 | genome | IBSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 52.7 | 7.4e-17 | 332 | 378 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
hn+ ErrRRdriN+++ L+el+P++ K +Ka++Le+A+eY+k Lq
MLOC_68598.4 332 VHNMSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 378
5*************************8.....6******************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 497 aa
Download sequence Send
to blast |
MLLRRSEPGN ELEELLWDNG PALRRAASPF PPFSCSAAGT AKPQELAKHP AMAQGHDDDA 60 VPWLQHYPII GVDDDGGGAD TTPIPQEYFS TLFPVFSDLT AAVASRDAGA PSTSHAAVAV 120 EPLPEPPAPP KQQQQQPPPR STGEGVMNFS FFSRPLQRSL PQASLRTSAA GSKSVESTLL 180 QTNSNRLRST PLFSEQRTAW LQPPKESPAP RPPAPPVPVR HAAEPAAALP QRLQPEARAA 240 ALPQRLQPEA RAAVLPQRLQ SEARASEMPP PPATATTSSV CSDNGERSQL KRSSHQTLEW 300 SVSQDDEDLD DEAGGLRRSA ARSTKRGRTA EVHNMSERRR RDRINEKMRA LQELIPNCNK 360 IDKASMLEEA IEYLKTLQLQ VQMMSTMGTA GMCMPPMLAM QHMQMPPMAH FHHHHLGAMG 420 FGMGPFDPRL VAAAGAAQFP YQMIPGAPMF GGHAMPAPPP FHQAAGAHMA AGPVTNDAPA 480 AQAEQAPGDH PQVPRTM
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Functional Description ? help
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Source |
Description |
UniProt | Atypical bHLH transcription factor that acts as negative regulator of grain size. Binds the transcription factor ILI6 and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}. |
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK376594 | 0.0 | AK376594.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3128I15. |
Publications
? help Back to Top |
- Cheng CH, et al.
A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] - Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] - Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]
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