PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_68598.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 493aa    MW: 53111 Da    PI: 6.7635
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_68598.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.87.3e-17328374455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    hn+ ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  MLOC_68598.2 328 VHNMSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 374
                   5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-20322381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.019324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.11E-18327378No hitNo description
SuperFamilySSF474596.94E-21327402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-14328374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-17330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MSEPGNELEE LLWDNGPALR RAASPFPPFS CSAAGTAKPQ ELAKHPAMAQ GHDDDAVPWL  60
QHYPIIGVDD DGGGADTTPI PQEYFSTLFP VFSDLTAAVA SRDAGAPSTS HAAVAVEPLP  120
EPPAPPKQQQ QQPPPRSTGE GVMNFSFFSR PLQRSLPQAS LRTSAAGSKS VESTLLQTNS  180
NRLRSTPLFS EQRTAWLQPP KESPAPRPPA PPVPVRHAAE PAAALPQRLQ PEARAAALPQ  240
RLQPEARAAV LPQRLQSEAR ASEMPPPPAT ATTSSVCSDN GERSQLKRSS HQTLEWSVSQ  300
DDEDLDDEAG GLRRSAARST KRGRTAEVHN MSERRRRDRI NEKMRALQEL IPNCNKIDKA  360
SMLEEAIEYL KTLQLQVQMM STMGTAGMCM PPMLAMQHMQ MPPMAHFHHH HLGAMGFGMG  420
PFDPRLVAAA GAAQFPYQMI PGAPMFGGHA MPAPPPFHQA AGAHMAAGPV TNDAPAAQAE  480
QAPGDHPQVP RTM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332337ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_68598.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3597000.0AK359700.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1101A22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164967.10.0transcription factor APG-like
SwissprotQ0JNI95e-75PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLM0YEX80.0M0YEX8_HORVV; Uncharacterized protein
STRINGMLOC_68598.40.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-32phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]