PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_68299.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | WRKY | ||||||||
Protein Properties | Length: 569aa MW: 59653.4 Da PI: 7.0957 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.8 | 1.4e-30 | 301 | 359 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ MLOC_68299.2 301 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRTILITTYEGTHNHP 359 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-33 | 285 | 361 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.37E-28 | 293 | 361 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.505 | 295 | 361 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-36 | 300 | 360 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.3E-27 | 302 | 359 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 569 aa Download sequence Send to blast |
MDKGHLGGGG GGGGLLALDA SPRQLGFLNL LSPAPFLRNM EADDGGGGGR GRRSIEVDFF 60 SDEKKNMKKS RASAGADADD QKDQASAAGL AIKKEDLTIN LLSGNNTRRD RSMVVDDDGA 120 SRADEDSNGR NTGELAAMQA ELSRMNDENQ RLRGMLTQVN NSYHALQMHL VTLMQQRTQM 180 PPAQPQQPPT HEEGKNESAI VPRQFLGLGP SGASAEVAEE PSNSSTEVGS PRRSSSNGNE 240 DPERGDNPDG PSTAGWLPGR GMTQQQQLGA AAKGHDQQAQ EATMRKARVS VRARSEAPII 300 ADGCQWRKYG QKMAKGNPCP RAYYRCTMAT GCPVRKQVQR CAEDRTILIT TYEGTHNHPL 360 PPAAMAMAST TSAAASMLLS GSMPSADGAG LMSSNFLART VLPCSSSMAT ISASAPFPTV 420 TLDLTHAPPG APNAMPLNVA RPHAPGQFHV PMPGGGMAPA FAMPPQMLYN QSKFSGLQMS 480 SDSVDAGQFA QPRQPMGLPG QLSDSVSAAA AAITADPNFT VALAAAISSI MAGQHAAGNS 540 NANNNNTTKN NVTTTSNNTT SNNTNSETQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-23 | 287 | 363 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_68299.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357452 | 0.0 | AK357452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1053M21. | |||
GenBank | AK364800 | 0.0 | AK364800.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028I03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186071.1 | 0.0 | WRKY transcription factor 6-like | ||||
Swissprot | Q9C519 | 1e-130 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A287KQ18 | 0.0 | A0A287KQ18_HORVV; Uncharacterized protein | ||||
STRING | MLOC_68299.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5265 | 36 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-114 | WRKY family protein |