PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_68285.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TCP
Protein Properties Length: 455aa    MW: 47718 Da    PI: 7.02
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_68285.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.42.6e-3485181283
           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaesssssas 83 
                   +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai+ l  +                ++++s+++++s  +s++
  MLOC_68285.2  85 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDNLDTLpawqptavapaasnaAAPPSSSTQPDSADNSDD 181
                   79**************************************************************666655555444433222222222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.7E-3185171IPR005333Transcription factor, TCP
PROSITE profilePS5136932.66987145IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MGDAGQSHSH HHHGLQTQLL SFGGAGNHHH HMHQFTAQAQ PPPASQTRAR GGRGGEMVPA  60
TPARVRGGGG GEIVAVQGGH IVRSTGRKDR HSKVCTARGP RDRRVRLSAH TAIQFYDVQD  120
RLGYDRPSKA VDWLIKNAKD AIDNLDTLPA WQPTAVAPAA SNAAAPPSSS TQPDSADNSD  180
DQAQAITIAH SSFDFAGSGG AGGATGGISF LPPSLDSDSI ADTIKSFFPM GGTAGGEPSS  240
STVAAHSSAM GFQGYTPDLL SRTGSQSQEL RLSLQPLPDP MFHHHHQQQE QHRSDGHDGN  300
GTAQQALFPG ATSYSFGGGG AMWAEQAPSQ RMMPWNVPDP GGGSTGGYLF NVSQQAAHMQ  360
AALSGQSQFF FQRGPLQSSN QPSDRGWPET VEADDNNPMQ QQHHQGGLNP SVSAIGFGPG  420
VSFSGFRVPA RMQGNEEHSG GNGDKPPSVS SASRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2092145154Putative transcription factor PCF6
5zkt_B5e-2092145154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_68285.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3766410.0AK376641.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3129N09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175459.10.0transcription factor PCF5-like
RefseqXP_020175460.10.0transcription factor PCF5-like
SwissprotQ8LT071e-180PCF5_ORYSJ; Transcription factor PCF5
TrEMBLF2EKG40.0F2EKG4_HORVV; Predicted protein
STRINGMLOC_68285.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.35e-38TCP family protein