PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_68151.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 314aa    MW: 35491.9 Da    PI: 10.7596
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_68151.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.7e-155931297
                  HTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE CS
            B3 12 ksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvf 97
                  k+ +lv+pk +a+eh    ++s+t++le   ++++W  ++ +rk + + ++ ++GW +Fv+  ++++gD++vF+++  g+ ++f+l+v+v+
  MLOC_68151.3  5 KLLLLVIPKGYADEHFP--PKSQTVVLECpGKSEKWHPRFHIRKDKHGaILCGSGWLDFVRKSRVQVGDICVFERMkkGTgRKFSLRVHVL 93
                  45579**********84..47889*****5566*******876666656999**********************76345556666777666 PP
2B347.24e-15215309598
                   -..-HHHHTT-E..E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
            B3   5 ltpsdvlksgrl..vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                   + +s+v+++++    + +++a+e+   +++++t+tl + ++++sWev++ + + +g+ vl++ W +F+  n+L+++D+++F+l+ + ++ +++v ++
  MLOC_68151.3 215 MNKSSVGNNSMYsvNICREYADEYL--PAGEQTVTLVTaQRSKSWEVEV-HPRDGGAKVLRGDWHKFACHNHLQVKDICLFQLMTDqRKLTMMVDII 308
                   5567777775332267788888773..445668888886888*******.55555669**************************8889999999997 PP

                   - CS
            B3  98 r 98 
                    
  MLOC_68151.3 309 H 309
                   6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.561196IPR003340B3 DNA binding domain
SMARTSM010193.5E-4396IPR003340B3 DNA binding domain
PfamPF023622.2E-13693IPR003340B3 DNA binding domain
SuperFamilySSF1019363.27E-16695IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-17896IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-14993No hitNo description
Gene3DG3DSA:2.40.330.102.2E-19203310IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-16204309IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-12209308No hitNo description
SMARTSM010190.0018211311IPR003340B3 DNA binding domain
PROSITE profilePS5086310.236213311IPR003340B3 DNA binding domain
PfamPF023621.3E-13213310IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSSHKLLLLV IPKGYADEHF PPKSQTVVLE CPGKSEKWHP RFHIRKDKHG AILCGSGWLD  60
FVRKSRVQVG DICVFERMKK GTGRKFSLRV HVLHKSMLHS GGSGTGPKRV SLTHGKTMVN  120
SGTPKRVRTT NGRTRAKATS TTCVRKEPGG DAPYSVHSHG HEARQGPVDS DKSRRPRKRP  180
YIISSTACLT REQKMNVDKR VRALQSKVPI YVSIMNKSSV GNNSMYSVNI CREYADEYLP  240
AGEQTVTLVT AQRSKSWEVE VHPRDGGAKV LRGDWHKFAC HNHLQVKDIC LFQLMTDQRK  300
LTMMVDIIHH NEKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_68151.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189914.11e-179B3 domain-containing protein Os03g0620400-like
TrEMBLA0A287DXI10.0A0A287DXI1_HORVV; Uncharacterized protein
STRINGMLOC_68151.20.0(Hordeum vulgare)