PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67940.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 346aa    MW: 37101.8 Da    PI: 8.7368
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67940.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.71.2e-9080342130374
          GRAS 130 qaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.......gEalaVnlvlqlhrlldesvs 219
                   +aLa Rp+gpps+R+Tgvg+p+++++++l+++g++La+fA++++v+f+++ lva +l+dle+ +L+ +         E++aVn+v+++hrll+++++
  MLOC_67940.2  80 RALALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLQPEGeedpneePEVIAVNSVFEMHRLLAQPGA 176
                   69***************************************************************544444557789******************** PP

          GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak.............lpres.eerikvErellgreivnvvaceg 302
                   le+    vL +v+ ++P++v+vveqea+hns+sFl+rf+e+l+yys++fdsle +             +p+++  +++++++++lgr+i+nvvaceg
  MLOC_67940.2 177 LEK----VLGTVRAVRPRIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDSLEGGssggpsevssggaAPAAAaGTDQVMSEVYLGRQICNVVACEG 269
                   ***....*********************************************98889**********86655569********************** PP

          GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   +er+erhetl++Wr+rl++aGF++v+l+++a+kqa++ll+ ++ +dgy+vee++g+l+lgW++rpL+++SaWr
  MLOC_67940.2 270 TERTERHETLGQWRNRLGNAGFETVHLGSNAYKQASTLLALFAgGDGYKVEEKEGCLTLGWHTRPLIATSAWR 342
                   ************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.3281321IPR005202Transcription factor GRAS
PfamPF035144.3E-8880342IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
PPPRRPRRSS TPPPLPPSRA AADTSISRPL STPPAAPTPC ARSSRRPSRR PTSPLTPSGT  60
PSGCALAAAA RRLRPPRRPR ALALRPGGPP SFRLTGVGPP QPDETDALQQ VGWKLAQFAH  120
TIRVDFQYRG LVAATLADLE PFMLQPEGEE DPNEEPEVIA VNSVFEMHRL LAQPGALEKV  180
LGTVRAVRPR IVTVVEQEAN HNSGSFLDRF TESLHYYSTM FDSLEGGSSG GPSEVSSGGA  240
APAAAAGTDQ VMSEVYLGRQ ICNVVACEGT ERTERHETLG QWRNRLGNAG FETVHLGSNA  300
YKQASTLLAL FAGGDGYKVE EKEGCLTLGW HTRPLIATSA WRLAAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3373341141378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. Acts as a negative regulator of GAMYB gene expression. {ECO:0000269|PubMed:12011349, ECO:0000269|PubMed:12011350, ECO:0000269|PubMed:12468736}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67940.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4602190.0AF460219.1 Hordeum vulgare subsp. vulgare nuclear transcription factor SLN1 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560731.11e-177DELLA protein SLN1
SwissprotQ8W1270.0SLN1_HORVU; DELLA protein SLN1
TrEMBLM0YCP50.0M0YCP5_HORVV; Uncharacterized protein
STRINGMLOC_67940.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-109GRAS family protein