PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67834.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 275aa    MW: 29418.9 Da    PI: 8.3215
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67834.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-13203248655
                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  MLOC_67834.2 203 SIAERVRRTRISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 248
                   689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.326197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-16200258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.01E-14201252No hitNo description
Gene3DG3DSA:4.10.280.102.5E-15202259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10203248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-14203253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MPPVGVEGLY RTVSSAGMDS AAAANGIGND SLLRQSSSPA GFLNHLNMDN GYESMLRQGM  60
GVGFRNGATN AAAAVDSSGS GGGRLKGQLS FSSRQGSLMS QISEMGSEDL GGSSPEGAGG  120
SRGYIPGYPM SSGWEESSLM SENMSGMKRP RDSSEPAQNG LAHQFSLPKT SSEMAAIEKF  180
LQFQDAVPCK IRAKRGCATH PRSIAERVRR TRISERIRKL QELVPNMDKQ TNTADMLDLA  240
VDYIKELQEQ VKVINESRAS CTCSASKQHH QQYSG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67834.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546340.0AK354634.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009F18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174831.11e-173transcription factor bHLH130-like
SwissprotQ66GR34e-62BH130_ARATH; Transcription factor bHLH130
TrEMBLF2CSN20.0F2CSN2_HORVV; Predicted protein
STRINGMLOC_67834.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]