PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67600.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WOX
Protein Properties Length: 234aa    MW: 25379 Da    PI: 10.1163
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67600.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.6e-2092151357
                   --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                   +R+++++eq+++Le+l++   r+p+ +++e+++++l    +++ ++V++WFqN++a+e++
  MLOC_67600.1  92 TRWNPSAEQIKVLEALYRGgMRTPNSAQIERITEELgrhgRIEGKNVFYWFQNHKARERQ 151
                   8*****************99**************************************97 PP
2Wus_type_Homeobox114.94e-3791153365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +tRW+P++eQik+Le+ly+ G+rtPn+++i+rit+eL ++G+ie+kNVfyWFQN+kaRerqkq
       MLOC_67600.1  91 TTRWNPSAEQIKVLEALYRGGMRTPNSAQIERITEELGRHGRIEGKNVFYWFQNHKARERQKQ 153
                        69***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.2287152IPR001356Homeobox domain
SMARTSM003894.3E-889156IPR001356Homeobox domain
SuperFamilySSF466894.71E-1391157IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-892151IPR009057Homeodomain-like
CDDcd000862.27E-692153No hitNo description
PfamPF000468.8E-1892151IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MRVHHLHVAS YLEKAASASS SPATPSASPP SALFPFGAFQ CLRPLAPKIS LPDQPKKLVA  60
PPDVLGRVRN ATKLLSCTVR NHTVQVPMGG TTRWNPSAEQ IKVLEALYRG GMRTPNSAQI  120
ERITEELGRH GRIEGKNVFY WFQNHKARER QKQKRAALLT LSTLDSSSLP ATATKDGTGD  180
KKEACDVAMN SCKRRCMTWG DGHGDAAAEV AAPDGCTDNV TLELFPLRPQ GKAA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL4420074e-91AL442007.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0212B02, complete sequence.
GenBankAL6066354e-91AL606635.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21, complete sequence.
GenBankAL6066924e-91AL606692.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02, complete sequence.
GenBankAP0149604e-91AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126124e-91CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankJF8361594e-91JF836159.1 Oryza sativa Japonica Group WUSCHEL-like homeobox protein (WOX4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161616.11e-163WUSCHEL-related homeobox 4-like
SwissprotQ25AM21e-102WOX4_ORYSI; WUSCHEL-related homeobox 4
SwissprotQ7XTV31e-102WOX4_ORYSJ; WUSCHEL-related homeobox 4
TrEMBLM0YBN41e-174M0YBN4_HORVV; Uncharacterized protein
STRINGMLOC_67600.11e-175(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126923035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.13e-38WUSCHEL related homeobox 4