PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67417.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 349aa    MW: 36705.9 Da    PI: 6.2298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67417.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-13122173155
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +r++h ++Er+RR+++N+ ++ Lr+l+P +   +  + + a+i   A++Y+k+L+
  MLOC_67417.2 122 QRMTHIAVERNRRRQMNEYLAVLRSLMPAS---YVHRGDQASIIGGAINYVKELE 173
                   79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-17120187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.58E-14120177No hitNo description
Gene3DG3DSA:4.10.280.101.7E-14120177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.58121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-11122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MALEAVVFSK GFFGCCAMAA EAGGGGGGGV WGGNGHGHSG GMELDGSNSD CAAAAASISV  60
MIPCTEVPEG SSSLPALPPP GHGGDRGDAD GADGAAAAAG AAGRRKRRRA RSVKNIEEAE  120
SQRMTHIAVE RNRRRQMNEY LAVLRSLMPA SYVHRGDQAS IIGGAINYVK ELEQLVQSLE  180
AHRHAHHSDD RPASGDVSPS VAPFADFFTF PQYTMSVRHA PATPAADASA DDGGGNAEDD  240
ATPGSKQSAV ADIEVTIVES HASLRVLSRR RPRQLLRIMA GLQGHRLAVL HLNATSAGHM  300
ALYCLSLKVE DDCRLSSVEE IAAAVHRIVE TIQREEEGEG EERQRQSCT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104108RKRRR
2122133RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67417.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076263e-80AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence.
GenBankHQ8588613e-80HQ858861.1 Oryza sativa Japonica Group isolate UT1670 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156069.11e-165transcription factor bHLH94-like
TrEMBLA0A287UWC90.0A0A287UWC9_HORVV; Uncharacterized protein
STRINGMLOC_67417.30.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-66bHLH family protein