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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_67417.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 318aa MW: 33180.1 Da PI: 7.2029 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.9 | 1.8e-13 | 122 | 173 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P + + + + a+i A++Y+k+L+ MLOC_67417.1 122 QRMTHIAVERNRRRQMNEYLAVLRSLMPAS---YVHRGDQASIIGGAINYVKELE 173 79****************************...9******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.05E-15 | 120 | 177 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-14 | 120 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-17 | 120 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.58 | 121 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.5E-11 | 122 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-10 | 127 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MALEAVVFSK GFFGCCAMAA EAGGGGGGGV WGGNGHGHSG GMELDGSNSD CAAAAASISV 60 MIPCTEVPEG SSSLPALPPP GHGGDRGDAD GADGAAAAAG AAGRRKRRRA RSVKNIEEAE 120 SQRMTHIAVE RNRRRQMNEY LAVLRSLMPA SYVHRGDQAS IIGGAINYVK ELEQLVQSLE 180 AHRHAHHSDD RPASGDVSPS VAPFADFFTF PQYTMSVRHA PATPAADASA DDGGGNAEDD 240 ATPGSKQSAV ADIEVTIVES HASLRVLSRR RPRQLLRIMA GLQGHRLAVL HLNATSAGHM 300 ALYCLSLKVR STYSPCYS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 108 | RKRRR |
2 | 122 | 133 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_67417.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107626 | 3e-80 | AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence. | |||
GenBank | HQ858861 | 3e-80 | HQ858861.1 Oryza sativa Japonica Group isolate UT1670 bHLH transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156069.1 | 1e-149 | transcription factor bHLH94-like | ||||
Swissprot | Q9SK91 | 2e-58 | BH094_ARATH; Transcription factor bHLH94 | ||||
TrEMBL | M0YAY3 | 0.0 | M0YAY3_HORVV; Uncharacterized protein | ||||
STRING | MLOC_67417.3 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22490.1 | 9e-60 | bHLH family protein |
Publications ? help Back to Top | |||
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