PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67369.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 328aa    MW: 35509.3 Da    PI: 6.0488
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67369.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.3e-112532931055
                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   r+RR++iN+++  L+ l+P+      +K++ +++Le+Av+YIk +q
  MLOC_67369.1 253 RKRREKINERLKVLQHLIPNG-----TKVDISTMLEEAVHYIKFMQ 293
                   9******************97.....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.951243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-13246306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-12248302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-12249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.15E-12252297No hitNo description
PfamPF000102.2E-8253293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MESSEASWHS FDPSVAVEDS EEMARLLGVQ FFGNEQKQHP AAVPPSSMYW PGQEAADQYY  60
TSAPYYMQMQ EHASAGAGYH SHGYYDGGAM AGDFFVAPEE QIMADPAGFM VDLNLQFDDQ  120
DDGAGTSAAA CKRKFGDQNG TQSDTVAAPK KKARSTAPPV QRKGKSSAQP KKAPKGSCSR  180
GAHEESNGEA NNNNVPSSSN YLSDEEGSLE MTSCSNMSSA SKKTSSSRGD HGGGAKARAG  240
RGAATDPQSL YARKRREKIN ERLKVLQHLI PNGTKVDIST MLEEAVHYIK FMQLQIKLLS  300
SDDMWMFAPI AYNGFNVGLD LKIAPPQQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154PKKKARS
2252257RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67369.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163011.11e-169transcription factor bHLH85-like
TrEMBLM0YAS70.0M0YAS7_HORVV; Uncharacterized protein
STRINGMLOC_67369.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.17e-47bHLH family protein