PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_67201.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

GRF

Protein Properties

Length: 470aa MW: 50896.6 Da PI: 7.2015

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_67201.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.2	6.8e-24	73	116	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e MLOC_67201.3 73 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 116 69***************************************986 PP
2	QLQ	66	9e-23	6	42	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKyLaan PvP++Ll++i++ MLOC_67201.3 6 GPFTPSQWMELEHQALIYKYLAANIPVPHNLLVPIRR 42 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	5.1E-14	6	42	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.377	7	42	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.3E-16	7	41	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.65	72	116	IPR014977	WRC domain
Pfam	PF08879	3.7E-20	74	115	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MARVRGPFTP SQWMELEHQA LIYKYLAANI PVPHNLLVPI RRSVTSLYPS AYFGSSTLGW 60 GPFQLGYSGN ADLEPGRCRR TDGKKWRCSR DAVADQKYCE RHMNRGRHRS RKHVEGQPGH 120 AAKAMPATVA AAAQPGALAA GGCGGATAGA AIGHEQQPMK SYAANAIDPC SLQYNSREMV 180 SKQQQECEQV QDSDSLSMLT SMSARNTAGS MFPFSKEHHN HNHNHNHNPF EVTSSRPDYG 240 LVSSDSLMTS SPHSSLENVN LLTSQRALSN EQQSSLSLQH FADWPRTPSQ QGHGGALSWP 300 DAEDMQQAHQ RTQLSISAPM ASSDLSSAST SPIHEKLMLS PLKLSREYSP IGLSIAATAA 360 AKEDEGEANW MPLFRDSAMG GPLGEALNKN NGGNMEAKNY LSASLNLMTD AWDSSPLESS 420 PVGVLQRTAF GSVSSSTGSS PRQEYHGVYD GVPRDDLGSI VVNHPSIRLM

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MARVRGPFTP SQWMELEHQA LIYKYLAANI PVPHNLLVPI RRSVTSLYPS AYFGSSTLGW  60
GPFQLGYSGN ADLEPGRCRR TDGKKWRCSR DAVADQKYCE RHMNRGRHRS RKHVEGQPGH  120
AAKAMPATVA AAAQPGALAA GGCGGATAGA AIGHEQQPMK SYAANAIDPC SLQYNSREMV  180
SKQQQECEQV QDSDSLSMLT SMSARNTAGS MFPFSKEHHN HNHNHNHNPF EVTSSRPDYG  240
LVSSDSLMTS SPHSSLENVN LLTSQRALSN EQQSSLSLQH FADWPRTPSQ QGHGGALSWP  300
DAEDMQQAHQ RTQLSISAPM ASSDLSSAST SPIHEKLMLS PLKLSREYSP IGLSIAATAA  360
AKEDEGEANW MPLFRDSAMG GPLGEALNKN NGGNMEAKNY LSASLNLMTD AWDSSPLESS  420
PVGVLQRTAF GSVSSSTGSS PRQEYHGVYD GVPRDDLGSI VVNHPSIRLM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_67201.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376067	0.0	AK376067.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3113P04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187288.1	0.0	growth-regulating factor 6-like
Swissprot	Q6AWY3	0.0	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A287N5R0	0.0	A0A287N5R0_HORVV; Uncharacterized protein
STRING	MLOC_67201.1	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	4e-49	growth-regulating factor 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]