PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_67201.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

GRF

Protein Properties

Length: 531aa MW: 57297.3 Da PI: 7.4454

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_67201.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75	8e-24	134	177	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e MLOC_67201.2 134 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 177 69***************************************986 PP
2	QLQ	65.8	1e-22	67	103	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKyLaan PvP++Ll++i++ MLOC_67201.2 67 GPFTPSQWMELEHQALIYKYLAANIPVPHNLLVPIRR 103 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	5.1E-14	67	103	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.377	68	103	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.5E-16	68	102	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.65	133	177	IPR014977	WRC domain
Pfam	PF08879	4.3E-20	135	176	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MCVDASRFGG LCSRRKCSFF FLSCLLVLHC LCLVCSSDLL GVLSWVAGLS SVSLSASIQG 60 AMARVRGPFT PSQWMELEHQ ALIYKYLAAN IPVPHNLLVP IRRSVTSLYP SAYFGSSTLG 120 WGPFQLGYSG NADLEPGRCR RTDGKKWRCS RDAVADQKYC ERHMNRGRHR SRKHVEGQPG 180 HAAKAMPATV AAAAQPGALA AGGCGGATAG AAIGHEQQPM KSYAANAIDP CSLQYNSREM 240 VSKQQQECEQ VQDSDSLSML TSMSARNTAG SMFPFSKEHH NHNHNHNHNP FEVTSSRPDY 300 GLVSSDSLMT SSPHSSLENV NLLTSQRALS NEQQSSLSLQ HFADWPRTPS QQGHGGALSW 360 PDAEDMQQAH QRTQLSISAP MASSDLSSAS TSPIHEKLML SPLKLSREYS PIGLSIAATA 420 AAKEDEGEAN WMPLFRDSAM GGPLGEALNK NNGGNMEAKN YLSASLNLMT DAWDSSPLES 480 SPVGVLQRTA FGSVSSSTGS SPRQEYHGVY DGVPRDDLGS IVVNHPSIRL M

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MCVDASRFGG LCSRRKCSFF FLSCLLVLHC LCLVCSSDLL GVLSWVAGLS SVSLSASIQG  60
AMARVRGPFT PSQWMELEHQ ALIYKYLAAN IPVPHNLLVP IRRSVTSLYP SAYFGSSTLG  120
WGPFQLGYSG NADLEPGRCR RTDGKKWRCS RDAVADQKYC ERHMNRGRHR SRKHVEGQPG  180
HAAKAMPATV AAAAQPGALA AGGCGGATAG AAIGHEQQPM KSYAANAIDP CSLQYNSREM  240
VSKQQQECEQ VQDSDSLSML TSMSARNTAG SMFPFSKEHH NHNHNHNHNP FEVTSSRPDY  300
GLVSSDSLMT SSPHSSLENV NLLTSQRALS NEQQSSLSLQ HFADWPRTPS QQGHGGALSW  360
PDAEDMQQAH QRTQLSISAP MASSDLSSAS TSPIHEKLML SPLKLSREYS PIGLSIAATA  420
AAKEDEGEAN WMPLFRDSAM GGPLGEALNK NNGGNMEAKN YLSASLNLMT DAWDSSPLES  480
SPVGVLQRTA FGSVSSSTGS SPRQEYHGVY DGVPRDDLGS IVVNHPSIRL M

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_67201.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376067	0.0	AK376067.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3113P04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187288.1	0.0	growth-regulating factor 6-like
Swissprot	Q6AWY3	0.0	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	M0YA53	0.0	M0YA53_HORVV; Uncharacterized protein
STRING	MLOC_67201.1	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	9e-50	growth-regulating factor 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]