PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

MYB

Protein Properties

Length: 287aa MW: 31923.8 Da PI: 4.9649

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_6696.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.8	3.8e-11	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l + g+ +W+++++ g+ R++k+c++rw +yl MLOC_6696.1 14 RGPWTAEEDRKLMGFILGNAGRcCWRAVPKLAGLLRCGKSCRLRWTNYL 62 89***********99998889******99**********97 PP
2	Myb_DNA-binding	48.4	2.1e-15	71	112	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T +E+ l vd+ ++lG++ W++Ia++++ gRt++++k++w+++ MLOC_6696.1 71 LTDDEERLVVDLPAKLGNR-WSKIAAKLP-GRTDNEIKNHWNTH 112 699**************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.0E-18	5	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.657	9	62	IPR017930	Myb domain
SuperFamily	SSF46689	6.27E-23	11	109	IPR009057	Homeodomain-like
SMART	SM00717	6.3E-5	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-9	14	62	IPR001005	SANT/Myb domain
CDD	cd00167	2.47E-5	16	62	No hit	No description
PROSITE profile	PS51294	26.204	63	117	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-23	64	118	IPR009057	Homeodomain-like
SMART	SM00717	4.8E-13	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	5.4E-13	71	112	IPR001005	SANT/Myb domain
CDD	cd00167	3.49E-10	72	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MGRQPCCDKL GVKRGPWTAE EDRKLMGFIL GNAGRCCWRA VPKLAGLLRC GKSCRLRWTN 60 YLRPDLKRGL LTDDEERLVV DLPAKLGNRW SKIAAKLPGR TDNEIKNHWN THIKKKLIKM 120 GIDPVTHEPL EVRKQPLQAS LSTTSTQSST VTIECKSNNG QQCQQHDTYF NRDKDASLGD 180 GESGPPELSG TNTNNTTSGN SGIHDQDPLV KWLLEEEDDL PTIGIVEEPW LDFTVANDVD 240 KFNVIPSAMS WDIGATDWLL DYQDFGVGES SLLDDASIVD SSSESNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-25	14	117	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269\|PubMed:15805488}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_6696.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK366060	0.0	AK366060.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2040B18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020184607.1	0.0	protein ODORANT1-like
Swissprot	Q50EX6	2e-85	ODO1_PETHY; Protein ODORANT1
TrEMBL	A0A287S0M9	0.0	A0A287S0M9_HORVV; Uncharacterized protein
STRING	MLOC_6696.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP79	38	563

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66230.1	5e-79	myb domain protein 20

Publications ? help Back to Top
Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC ODORANT1 regulates fragrance biosynthesis in petunia flowers. Plant Cell, 2005. 17(5): p. 1612-24 [PMID:15805488]