PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66843.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 175aa    MW: 18688.1 Da    PI: 10.5716
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66843.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77e-192878256
           AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                  +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+ eAa a+++a++ l+g+
  MLOC_66843.1 28 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPVEAAFAYDRAARTLRGA 78
                  7********.**********883....5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.47E-222886IPR016177DNA-binding domain
PROSITE profilePS5103221.8382885IPR001471AP2/ERF domain
CDDcd000181.14E-292886No hitNo description
SMARTSM003807.2E-332891IPR001471AP2/ERF domain
PfamPF008472.4E-112877IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-312887IPR001471AP2/ERF domain
PRINTSPR003677.8E-102940IPR001471AP2/ERF domain
PRINTSPR003677.8E-105167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MDPVLRGAAS PGGGQGGAGG GGGGGEAHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDT  60
PVEAAFAYDR AARTLRGAKA KTNFPDHAHR HHHHRPPLQQ QPVPFGGIDL NLNFPSPWHF  120
VYFSPPAAAP APRLPQEASP AASVPPSTAL ELGMAPRPAG LPFDLNEPPS LLFGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-202885563ATERF1
3gcc_A2e-202885563ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66843.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172360.15e-84ethylene-responsive transcription factor 12-like
TrEMBLA0A3B6H0L17e-88A0A3B6H0L1_WHEAT; Uncharacterized protein
STRINGMLOC_66843.11e-122(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.11e-32ERF domain protein 12